Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g0012 ATGCGTTTTCCAACTTCATTATCTATGACACCATCTCTGCAACCCCATTTAGCAGTCATGACTATTCACAGGCTAGTTTCAGTGGTAGAAAATATGGTGAACTATCAGGAACCTGACCCTGCGTCTGCATTTGATAACTGTGCACTGATGAGGACCCGAAAACGGCAATCGGGCAGGAGGCAGAATAATAATGTTGGTGTGCAAGTGCAAGGGAGGAAGAAGGGGAGAAGGAAGCCGAGGGTTTGCAAGAACAAGGAAGAGGCTGAGACACAGAGAATGACCCACATTGCCGTGGAAAGAAACCGCCGCAAGCAGATGAACGAGCATCTTGCTGTTCTTCGTTCCCTTATGCCTGAATCCTTCGTCCAAAGGGGTGACCAGGCCTCTATAGTGGGAGGTGCTATAGAATTTGTGAAGGAGCTGGAGCACCTCTTGCAGTCACTTGAAGCTGGAAAGCTGCAACTCTTAGAGCAAGAAGTAGCCCAAACCAATGAAGATACGGCCATTTCCAAACTCATGAGACCCCCTTTTGCACAATTTTTTGTGCATCCTCAGTACACATGGTCCCAGACTCCTAACAAATACACATCCAAGACCAAGGCTGCCATAGCTGATATCGAGGTTACTTTAATCGAGACCCATGCAAACCTTCGAATTCTCACACAAAGAAGCCCCAGGCAGCTATCCAAGTTGGTTGCTGGTTTCCAAACACTCTCACTCACCATCCTTCATCTAAATGTCGCAACCATGGACCCGTTGGTACTCTACTCTATCAGTGCCAAGGTTGAAGAAGGATTCCAACTTGGTTCAGTGGATGGCATTGCAACGGCAGTTCATCACTTGCTTGGAAGAATTGAAGAAGAATCTTCCCTTTGCTGTTAA 882 0.4705 MRFPTSLSMTPSLQPHLAVMTIHRLVSVVENMVNYQEPDPASAFDNCALMRTRKRQSGRRQNNNVGVQVQGRKKGRRKPRVCKNKEEAETQRMTHIAVERNRRKQMNEHLAVLRSLMPESFVQRGDQASIVGGAIEFVKELEHLLQSLEAGKLQLLEQEVAQTNEDTAISKLMRPPFAQFFVHPQYTWSQTPNKYTSKTKAAIADIEVTLIETHANLRILTQRSPRQLSKLVAGFQTLSLTILHLNVATMDPLVLYSISAKVEEGFQLGSVDGIATAVHHLLGRIEEESSLCC* 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g0012 293 Gene3D - 82 162 IPR036638 GO:0046983
Dod05g0012 293 MobiDBLite consensus disorder prediction 53 89 - -
Dod05g0012 293 PANTHER TRANSCRIPTION FACTOR BHLH71 54 292 - -
Dod05g0012 293 Coils Coil 138 158 - -
Dod05g0012 293 SMART finulus 96 147 IPR011598 GO:0046983
Dod05g0012 293 CDD bHLH_AtFAMA_like 93 152 - -
Dod05g0012 293 PANTHER MAX DIMERIZATION, MAD 54 292 - -
Dod05g0012 293 Pfam Helix-loop-helix DNA-binding domain 91 142 IPR011598 GO:0046983
Dod05g0012 293 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 90 141 IPR011598 GO:0046983
Dod05g0012 293 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 89 158 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g0012 Dod-Chr5 364302 366835 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g0012 82 262 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G72210 58.242 5.51e-63 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Dod05g0012 HLH 2.8e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g0012 - - gmx:100783542 421.394