Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g0010 ATGTCTTGGCCGGATCCCGGGCTCGATACAAGGCCTCCGGTAGTGCAATATACCACCCCACCGGCGCTGATAGCATTCACCCTAGCCATCCTAGTGTTGTGCTTCGTAGCATTTAGCATTGTGTACCTTTGCAAGTACTGCTTGGTAAGCGCGATCCAGTCTTTGGCCTTTGAACGCAGTGCCTCAGGCTCTCTATTTCGCCTCTCACCGAATAGGTCTCCTTCTAGAGGCCTTGACCCTTCATTGCTCCACATGTTCCCAACCTTTGTGTATTCCTCCGTGAAGAATCTCCGCAAGAAGAACAAGTGCAGCTTAGAATGCGCCATCTGCTTGCTGGAATTGGACGATGACAGCGTGCTTCGTCTCTTGCCGGTTTGCTGCCATGTCTTCCACCAGGAGTGCATTGACCTCTGGCTCCGCTCCCACAAGACATGCCCCGTTTGCCGCACAGACCTCGATTCCCCATCCACAGAAACCCCAAAATATGGGGACAATTGTAATCACATCATTAATCGTGCATGCGCAGAAGGAGATCATTGTACATGTGAAAGTGGTGGTGACATAAGCATTGACATAAGAGAAGGGGAAGGAGGTGATGGTGATGGGGGTGGTCAAAGTGCACATTATCATCATCATCAAGCGGTGGGTGTGAAGGGGCAGCAACAGCAAGAGCACACGAGGTCACACTCAACGGGGCATTCCATAGTTATGATTAGACGAGAAGAAGGAGCTGATGATGAACAACAACAAGAAGATGATAAGTATACGTTGAGATTGCCAGAGCATGTTATAAGAGGAGGAGGAGGAGGAGGACATAACTGTTCTAAGAGTTGTACAAATTACCAAGAGATGCAGATCACCTGGCCAGCTTGTACTAATTGTGGCTTCGTTGAATCCATATCAGCGGCGGCCTGTTCTAATTCCCTCGCCCATGCTCAAAAAACTTGA 948 0.4937 MSWPDPGLDTRPPVVQYTTPPALIAFTLAILVLCFVAFSIVYLCKYCLVSAIQSLAFERSASGSLFRLSPNRSPSRGLDPSLLHMFPTFVYSSVKNLRKKNKCSLECAICLLELDDDSVLRLLPVCCHVFHQECIDLWLRSHKTCPVCRTDLDSPSTETPKYGDNCNHIINRACAEGDHCTCESGGDISIDIREGEGGDGDGGGQSAHYHHHQAVGVKGQQQQEHTRSHSTGHSIVMIRREEGADDEQQQEDDKYTLRLPEHVIRGGGGGGHNCSKSCTNYQEMQITWPACTNCGFVESISAAACSNSLAHAQKT* 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g0010 315 PANTHER RING-H2 FINGER PROTEIN ATL29 11 284 - -
Dod05g0010 315 SUPERFAMILY RING/U-box 98 155 - -
Dod05g0010 315 SMART ring_2 107 148 IPR001841 -
Dod05g0010 315 Pfam Ring finger domain 106 149 IPR001841 -
Dod05g0010 315 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 67 156 IPR013083 -
Dod05g0010 315 PANTHER RING FINGER DOMAIN-CONTAINING 11 284 - -
Dod05g0010 315 MobiDBLite consensus disorder prediction 216 232 - -
Dod05g0010 315 CDD RING-H2_EL5_like 106 149 - -
Dod05g0010 315 ProSiteProfiles Zinc finger RING-type profile. 107 149 IPR001841 -
Dod05g0010 315 MobiDBLite consensus disorder prediction 191 232 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g0010 Dod-Chr5 349259 350206 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g0010 21 265 Rapid Response to Elicitors AT2G35000 32.941 3.02e-33 124
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g0010 - - gmx:100815505 305.449