Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g0009 ATGGATTACGGTCGAGATGGGAACGTTGTTCAAATAATCACCGGCGGGGGGGGCGAAGCCTGGTCAGCCGGGGACCAAGCCGATTGGGCCACCGAAGACGAGTACCGATTCTGGAACAACGGCGGCGGGGGGGACGGGGACACGCCGCCGTCGAACTCGAATTACGAGCAGAGACAGGCGCAGTGGCGGTCGGGGAGCGAGCCGGCGAGCAAGAAGGCGAGGAATTCGTCGCAGGACAGCGGGGGGAGCGGCGGGGGCGGGGGGTCGAACCGGTCGAAGGCGATCGGGAAGATGTTCTTCAAGACGAAGCTGTGCTGCAAGTTCCGGGCGGGGACCTGCCCTTACATCAACAACTGCAACTTCGCCCACAGCGTTGAGGAGCTTCGGCGCCCGCCCCCCAACTGGCAGGAGATTGTGGCCGCCCACGAGGAGGAGAAGGTGGCCGCTGCCACAACCCCAACTCCCACCCCCACCCACACCCCCTCCTCCGAGCCCACTCCCCCCAGGGAGGAGTTCCAGATTCCTATACTCTCATCCTCCAGTTTCGGCGGGGACATGTCCCAGAGGTCTTATAAGGGCCGCCATTGCAAGAAGTTCTACACCGAAGAAGGCTGCCCCTATGGCGATAGTTGCACCTTCCTTCATGACGAGCAGTCCAAGAATCGCGAGAGTGTCGCTATCAGTTTAGGTCCTGGTGGATATGGTGGTGGCAGCGCTGGTGGTAGTACTTCTGGTGGCGGTAGTGCCGGTGGCACTGGGAATGGACCTAATTCGAAGCCTTCCAATTGGAAAACCAGGATTTGCAATAAGTGGGACATGACCGGGCATTGCCCTTTTGGCAGCAAATGCCATTTTGCTCATGGTGCGACAGAACTGCACAGATATGGAGGTGGGCTTATGGAGGGGGAAAATAGAGACAGTGCTTCTGCTTCTGTTGTGGCTCCTGACACAAAACAGGGAGGAGTACCTTCAAAAACTCCTGCCGATAATGTGGTTGCATCAATTACTCCCGTTGCTCAGTCTGATGTCTATCATATTGGAGTTCCTTCACAAAGGCCTTCCATTGTGATTCAGAGGCCAGGACAGAGAACTCATCAGAAGTGGAAAGGTCCAGATAAAATCAGTAGGATATATGGTGATTGGATTGATGACATCGAATAG 1161 0.5659 MDYGRDGNVVQIITGGGGEAWSAGDQADWATEDEYRFWNNGGGGDGDTPPSNSNYEQRQAQWRSGSEPASKKARNSSQDSGGSGGGGGSNRSKAIGKMFFKTKLCCKFRAGTCPYINNCNFAHSVEELRRPPPNWQEIVAAHEEEKVAAATTPTPTPTHTPSSEPTPPREEFQIPILSSSSFGGDMSQRSYKGRHCKKFYTEEGCPYGDSCTFLHDEQSKNRESVAISLGPGGYGGGSAGGSTSGGGSAGGTGNGPNSKPSNWKTRICNKWDMTGHCPFGSKCHFAHGATELHRYGGGLMEGENRDSASASVVAPDTKQGGVPSKTPADNVVASITPVAQSDVYHIGVPSQRPSIVIQRPGQRTHQKWKGPDKISRIYGDWIDDIE* 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g0009 386 MobiDBLite consensus disorder prediction 241 262 - -
Dod05g0009 386 Gene3D - 184 230 - -
Dod05g0009 386 MobiDBLite consensus disorder prediction 226 262 - -
Dod05g0009 386 MobiDBLite consensus disorder prediction 147 170 - -
Dod05g0009 386 Gene3D - 256 294 - -
Dod05g0009 386 Gene3D - 94 130 - -
Dod05g0009 386 ProSiteProfiles Zinc finger C3H1-type profile. 262 290 IPR000571 GO:0046872
Dod05g0009 386 PANTHER CCCH ZINC FINGER/TIS11-RELATED 17 383 IPR045877 GO:0003729
Dod05g0009 386 SUPERFAMILY CCCH zinc finger 260 293 IPR036855 GO:0046872
Dod05g0009 386 MobiDBLite consensus disorder prediction 45 87 - -
Dod05g0009 386 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 12-LIKE 17 383 - -
Dod05g0009 386 Pfam CCCH-type zinc finger 194 216 IPR041367 -
Dod05g0009 386 MobiDBLite consensus disorder prediction 32 91 - -
Dod05g0009 386 SUPERFAMILY CCCH zinc finger 97 130 IPR036855 GO:0046872
Dod05g0009 386 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 263 288 IPR000571 GO:0046872
Dod05g0009 386 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 100 124 IPR000571 GO:0046872
Dod05g0009 386 ProSiteProfiles Zinc finger C3H1-type profile. 99 126 IPR000571 GO:0046872
Dod05g0009 386 SUPERFAMILY CCCH zinc finger 189 218 IPR036855 GO:0046872
Dod05g0009 386 SMART c3hfinal6 190 217 IPR000571 GO:0046872
Dod05g0009 386 SMART c3hfinal6 262 289 IPR000571 GO:0046872
Dod05g0009 386 SMART c3hfinal6 99 125 IPR000571 GO:0046872
Dod05g0009 386 MobiDBLite consensus disorder prediction 303 328 - -
Dod05g0009 386 ProSiteProfiles Zinc finger C3H1-type profile. 190 218 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g0009 Dod-Chr5 344939 348085 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g0009 264 292 C3H Transcription Factor Family AT1G68200 62.069 1.18e-06 48.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Dod05g0009 zf-CCCH 7.8e-10 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g0009 - - gmx:100788208 547.74