Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g0007 ATGTCGGACCACGGTTCGTTCTCTGCCTCGACCGTGGAGGCAAAAGAGAGAAAGCAGAAAGAAGCAGAGTGTAGAAAGGAGCTGAAGGTTCCTTTGCTCAAGCTCTTCTCATTTGCTGACTTCTATGATTGTGTCTTGATGGCTGTTGGATCCATTGGGGCATGTGTTCATGGTGCTTCCGTGCCCGTTTTCTTTATTTTCTTTGGGAAGATGATCGATGTAATAGGCTTCGCTTACCTTTTTCCCAAGGAAGCTTCTCACCAAGTTGCCAAGTATTCATTGGATTTTGTGTATCTAAGTATAGTAATCTTGTTTTCATCTTGGACAGAGGTTGCTTGCTGGATGCATACTGGGGAACGTCAAGCAGCAAAGATGAGGATGGCCTATTTAAGGTCAATGTTGAATCAAGATATAAGTCTATTTGATACCGATGCATCAACCGGAGAAGTCATTTCTGCCATTACAAGTGACATCATCGTTGTTCAAGACGCTCTATCCGAGAAGGTAGGAAACTTCATGCACTACATAAGCCGATTTGTAGCGGGCTTTATCATTGGCTTCGTCCGAGTGTGGCAGATCAGTTTAGTGACACTTGCAATAGTACCGTTTATTGCCCTTGCTGGAGGTCTTTATGCATATGTCACATTTGGGCTTGTTGCAAAGGTTCGCAAAGCCTATGTAAGGGCTGGTGAGATCGCTGAGGAGGTGATAGCCAACGTGAGAACGGTACAAGCGTTTGTAGGAGAAGTAAGAGCAGTGAGATCATACAAAGCGGCTCTCATGTGCACATATAGAAACGGTCGAAAAGCAGGTTTAGCAAAGGGTTTGGGGCTTGGCTCTATGCACTGTGTCCTTTTTCTATCGTGGGCTCTGCTTGTTTGGTTCACTAGCATTGTTGTTCACAAGCACATCGCCAATGGTGGCGTGTCTTTCACTACCATGCTCAACGTTGTCATCTCTGGCCTGTCACTTGGGCAGGCAGCACCAGATATTTCGGCATTTATCCGAGCAAAGGCAGCTGCTTATCCCATATTTGAGATGATAGAAAGGGACACAGTGAGCAAAATCAGCTCAAAAACTGATCGAAAACTAAGCAAACTAGAGGGTAACATCCAATTTAAGGATGTCTGTTTCAGTTACCCTTCTCGTCCTGATGTAGTCATTTTCAACAACCTTTGTCTAGAGATACCTTCAGGGAAAATTGTGGCCCTAGTGGGAGGAAGTGGTTCCGGGAAAAGCACCGTAATATCATTGATTGAGCGCTTCTATGAACCACTTTCTGGTCAAATACTATTAGATGGGAATGATATCAGGGAACTTGATATCAAATGGCTTAGACAGCAAATTGGGCTAGTTAATCAAGAGCCCGCACTTTTTGCAACAAGCATCAGGGAGAACATCCTGTATGGAAAAGATGATGCCACAATAGTAGAAATCAATCATGCTGTGATGCTTTCCGATGCTGAGTCTTTCATTAACAATCTTCCTGAAGGATTAGATACGCAGGTTGGTGAGAGAGGGATACAACTATCAGGGGGGCAGAAGCAAAGGATTGCAATATCTCGTGCTATTGTTAGGAATCCATCAATACTTTTACTGGATGAAGCAACAAGTGCTCTGGATGCAGAGTCCGAGAAGAGTGTACAGGAGGCTCTTGATCGAGTCATGGTTGGTAGAACAACTGTGATAGTGGCACACAGGCTTTCTACCATTAGGAATGCAGATATCATAGCCGTTGTTCAGGAAGGGAGGATTGTGGAAACTGGCAGCCATGAGGAGCTCATTTCCCACCCAAATAGTGTATATGCGTCTCTTGTTCAAATCCAGGAGTCTGCCCCTTTGCAACACCGCCCTTCTGTGGATCCTAGCTCCGGACGAATATCGAGCTCCCGTACAGCGAGCTTTGGTGGTAGCTTTCGTTCAGATAAAGAATCCATTGGCCGTGCTGGTTCTAATGAAGCAGAAAGTGTTGGAAACTCAAGGCGTGTCTCAACGAGAAGACTATTTTCCATGATTGGTCCTGACTGGTATTATGGGGTTTTTGGAACCTTGGGTGCATTTGTTGCTGGAGCCCAGATGCCACTTTTTGCTCTTGGAATCACTCACGCTCTTGTAGCATACTATATGGACTGGGATACAACACGTCATGAAGTCAAAAGAATAGCTTTGCTCTTCTGTGGGGCAGCAGTTGTAACTGTCACTGCCCATGCCATTGAACATCTTTCATTTGGAATCATGGGCGAGCGACTTACCCTTCGCGTGAGAGAAACCATGTTTTCTGCTATTCTGAGAAACGAAATTGGCTGGTTTGATGATATTAGCAACACAAGTTCTATGCTTTCATCACGTTTAGAGACTGATGCAACTTTATTAAGAACAATAGTTGTTGATCGTTCTACGATTCTCATACAGAATGTTGGTCTGATTGTTACTTCATTCATTATTGCCTTCATTTTGAACTGGAGGATAACACTTGTTGTTTTGGCCACATATCCTTTGATCATCAGTGGTCACATCAGTGAGAAACTTTTCATGAAAGGCTTTGGTGGCAACTTGAGCAAATCATATCTAAAAGCCAACATGATGGCTGGAGAGGCTGTGAGTAATATACGCACAGTCGCAGCATTCTGTTCTGAAGAAAAAGTCCTAGACCTTTATGCTCAAGAGCTTGTTGAGCCATCCAAGCGCTCATTCAAACGGGGCCAAATTGCTGGCATATTCTATGGCGTTTCCCAGTTCTTTATTTTCTCGTCTTATGGCCTTGCCTTGTGGTACGGATCTGTGTTGATAGAAAAGGAGCTTGCTGGCTTTAAATCAGTTATGAAGTCATTTATGGTTTTAATCGTAACTGCACTGGCTATGGGGGAGACTTTGGCACTGGCACCAGACCTGCTGAAAGGGAATCAAATGGCTGCATCAGTTTTTGAGGTGATGGATAGAAGGGCGGGAATAATGGGCGATGCAGGGGAAGAGTTGCATAAAGTGGAAGGAACGATTGAGCTGAAAAATATCCATTTCCGCTACCCTTCAAGGCCAGACGTGGTTATTTTAAATGATTTCAATCTGAGAGTGCCTTCAGGAAAGTGTGTTGCCTTGGTGGGCCACAGTGGTTCTGGTAAAAGTTCTGTCATCTCCCTTATACTCAGATTTTATGATCCAACATCTGGGAGGGTTATGATTGATGGGAAAAACATCAGGAATCTTAATTTGAAATCTCTCAGGAAGCACATTGGATTTGTGCAACAAGAACCGGCTCTTTTCGCAACATCAATTTATGAAAATATTCTTTACGGGAAGGAAAGAGCCTCTGACTCAGAAGTAGTTGAAGCAGCTAAGCTTGCAAATGCTCATGGTTTTATCAGTGGTCTTCCTGAGGGCTACTCCACCAAAGTAGGTGAGAGAGGAGTTCAGCTATCTGGTGGCCAGAGACAAAGGATAGCCATTGCCAGGGCTGTTTTGAAGAACCCCGAAATATTGCTGCTGGATGAAGCCACCAGTGCACTGGATGTGGAGTCAGAGCGTGTCGTACAGCAAGCTTTAGACAGATTGATGCAGAGCAGAACAACAGTTATGGTGGCTCATAGGTTATCCACAATCAGAAATGCTCACCAAATCTCGGTTATAGAGGATGGAAAGATAATAGAGCAAGGGACTCATTCAAGTCTTACAGAGAACAAAAATGGAGCATACTATAAATTAGTCAACCTTCAACAACAGCAGCATCTACATGAACATAACGGATGA 3744 0.441 MSDHGSFSASTVEAKERKQKEAECRKELKVPLLKLFSFADFYDCVLMAVGSIGACVHGASVPVFFIFFGKMIDVIGFAYLFPKEASHQVAKYSLDFVYLSIVILFSSWTEVACWMHTGERQAAKMRMAYLRSMLNQDISLFDTDASTGEVISAITSDIIVVQDALSEKVGNFMHYISRFVAGFIIGFVRVWQISLVTLAIVPFIALAGGLYAYVTFGLVAKVRKAYVRAGEIAEEVIANVRTVQAFVGEVRAVRSYKAALMCTYRNGRKAGLAKGLGLGSMHCVLFLSWALLVWFTSIVVHKHIANGGVSFTTMLNVVISGLSLGQAAPDISAFIRAKAAAYPIFEMIERDTVSKISSKTDRKLSKLEGNIQFKDVCFSYPSRPDVVIFNNLCLEIPSGKIVALVGGSGSGKSTVISLIERFYEPLSGQILLDGNDIRELDIKWLRQQIGLVNQEPALFATSIRENILYGKDDATIVEINHAVMLSDAESFINNLPEGLDTQVGERGIQLSGGQKQRIAISRAIVRNPSILLLDEATSALDAESEKSVQEALDRVMVGRTTVIVAHRLSTIRNADIIAVVQEGRIVETGSHEELISHPNSVYASLVQIQESAPLQHRPSVDPSSGRISSSRTASFGGSFRSDKESIGRAGSNEAESVGNSRRVSTRRLFSMIGPDWYYGVFGTLGAFVAGAQMPLFALGITHALVAYYMDWDTTRHEVKRIALLFCGAAVVTVTAHAIEHLSFGIMGERLTLRVRETMFSAILRNEIGWFDDISNTSSMLSSRLETDATLLRTIVVDRSTILIQNVGLIVTSFIIAFILNWRITLVVLATYPLIISGHISEKLFMKGFGGNLSKSYLKANMMAGEAVSNIRTVAAFCSEEKVLDLYAQELVEPSKRSFKRGQIAGIFYGVSQFFIFSSYGLALWYGSVLIEKELAGFKSVMKSFMVLIVTALAMGETLALAPDLLKGNQMAASVFEVMDRRAGIMGDAGEELHKVEGTIELKNIHFRYPSRPDVVILNDFNLRVPSGKCVALVGHSGSGKSSVISLILRFYDPTSGRVMIDGKNIRNLNLKSLRKHIGFVQQEPALFATSIYENILYGKERASDSEVVEAAKLANAHGFISGLPEGYSTKVGERGVQLSGGQRQRIAIARAVLKNPEILLLDEATSALDVESERVVQQALDRLMQSRTTVMVAHRLSTIRNAHQISVIEDGKIIEQGTHSSLTENKNGAYYKLVNLQQQQHLHEHNG* 1248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g0007 1247 SMART AAA_5 1026 1198 IPR003593 -
Dod05g0007 1247 SMART AAA_5 398 590 IPR003593 -
Dod05g0007 1247 MobiDBLite consensus disorder prediction 614 639 - -
Dod05g0007 1247 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 371 607 IPR003439 GO:0005524
Dod05g0007 1247 MobiDBLite consensus disorder prediction 614 658 - -
Dod05g0007 1247 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 999 1235 IPR003439 GO:0005524
Dod05g0007 1247 Pfam ABC transporter 390 538 IPR003439 GO:0005524
Dod05g0007 1247 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 992 1237 IPR027417 -
Dod05g0007 1247 CDD ABC_MTABC3_MDL1_MDL2 371 609 - -
Dod05g0007 1247 Pfam ABC transporter 1017 1166 IPR003439 GO:0005524
Dod05g0007 1247 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 363 609 IPR027417 -
Dod05g0007 1247 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 48 336 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Dod05g0007 1247 PANTHER ABC TRANSPORTER B FAMILY PROTEIN 23 1241 - -
Dod05g0007 1247 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 23 1241 IPR039421 -
Dod05g0007 1247 Pfam ABC transporter transmembrane region 681 952 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Dod05g0007 1247 Pfam ABC transporter transmembrane region 52 319 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Dod05g0007 1247 CDD ABC_6TM_Pgp_ABCB1_D2_like 669 984 - -
Dod05g0007 1247 CDD ABC_MTABC3_MDL1_MDL2 999 1237 - -
Dod05g0007 1247 CDD ABC_6TM_Pgp_ABCB1_D1_like 47 344 - -
Dod05g0007 1247 ProSitePatterns ABC transporters family signature. 510 524 IPR017871 GO:0005524
Dod05g0007 1247 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 679 966 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Dod05g0007 1247 ProSitePatterns ABC transporters family signature. 1138 1152 IPR017871 GO:0005524
Dod05g0007 1247 SUPERFAMILY ABC transporter transmembrane region 666 979 IPR036640 GO:0005524|GO:0016021
Dod05g0007 1247 Gene3D - 989 1246 IPR027417 -
Dod05g0007 1247 Gene3D ABC transporter type 1, transmembrane domain 34 969 IPR036640 GO:0005524|GO:0016021
Dod05g0007 1247 Gene3D - 361 610 IPR027417 -
Dod05g0007 1247 SUPERFAMILY ABC transporter transmembrane region 35 341 IPR036640 GO:0005524|GO:0016021
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g0007 Dod-Chr5 309394 320621 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g0007 49 631 Calmodulin-binding Proteins AT2G36910 39.255 2.17e-114 386
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g0007 K05658 - gmx:100819045 2030.37