Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g0002 ATGGACAAGGCGGAGGCAGAGGACAAGGTCAATGATAAGGTTACGGTAAGAGGAGATGAGACAGTAGAGAAGGTGGTAGAGAGTACGGACAAAGTAGCACGTGGGAGATCCATCCCGGCGGTTTACGAAACACCAAACTTTTTCTATTTTACTTCCCTTTCTAAGGAAAATTCGCGCCGACTTTCTCGAGAAAGTTGGGGTTGCGGCGCAATTAGAAGAGAACGAATCACTATGAGCTTTCAGGACATAGAAGCTGGCCGTCCCTTCGGTGGTTCGAGGCGTGGCCTCATCAATGGGAACCAAGACCCTACCCAAGCAGTGGCTGCCGGCATATTCCAGATTAATACCGCCGTCTTCACCTTCCAGAGGCTCGTCAACACCCTTGGAACCCCGAAAGACACCGCCGAGCTCCGCGAAAAGCTCCACAAGACGAGGCTACATATTGGGCAATTGGTGAAGGATACATCAGATAAACTTAAGCAAGCGAGTGATCTGGATCACCATGTTGAAGTTAATGCAAGCAAGAAGATAGCAGATGCCAAACTTGCAAAAGATTTTCAAGCGGCGTTGAAAGAATTTCAGAAGGCACAACGTCTTGCAGCTGAAAGGGAAACAGCTTATACTCCTTTTGTTCCTCAAGCAGATCTTCCTTCCAGCTATACAGCTAGCGAAGTAGATGCTAATTCTGATAAGACTCCAGAACAGCGTGCCCTTCTTGGGGAATCCAGGAGGCAGGAGGTTTTATTTTTAGATAATGATATTGCCTTAAACGAAGCTATCATTGAGGAAAGGGAGCAAGGCATTCAAGAAATACAGCAGCAAATTGGTGAAGTTAATGAGATTGTCAAAGATCTTGCTGTGCTGGTCCATGAGCAAGGAGCCATGATTGATGACATTGGCTCCAACATCGAGAACTCCCATGCAGCAACTTCACAAGCAAAATCTCAACTCGCCAAAGCTTCAAAAACCCAAAGATCAAATTCATCTTTGACATGTTTGCTTTTGGTGATATTTGGGATTGTGCTTCTCATCGTGATCATAGTTCTGGCTGCTTAG 1056 0.4602 MDKAEAEDKVNDKVTVRGDETVEKVVESTDKVARGRSIPAVYETPNFFYFTSLSKENSRRLSRESWGCGAIRRERITMSFQDIEAGRPFGGSRRGLINGNQDPTQAVAAGIFQINTAVFTFQRLVNTLGTPKDTAELREKLHKTRLHIGQLVKDTSDKLKQASDLDHHVEVNASKKIADAKLAKDFQAALKEFQKAQRLAAERETAYTPFVPQADLPSSYTASEVDANSDKTPEQRALLGESRRQEVLFLDNDIALNEAIIEEREQGIQEIQQQIGEVNEIVKDLAVLVHEQGAMIDDIGSNIENSHAATSQAKSQLAKASKTQRSNSSLTCLLLVIFGIVLLIVIIVLAA* 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g0002 351 ProSitePatterns Syntaxin / epimorphin family signature. 264 303 IPR006012 GO:0005484|GO:0006886|GO:0016020
Dod05g0002 351 CDD SynN 101 227 IPR006011 GO:0016020
Dod05g0002 351 PANTHER SYNTAXIN OF PLANTS PROTEIN 83 350 - -
Dod05g0002 351 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 258 320 IPR000727 -
Dod05g0002 351 Gene3D - 253 351 - -
Dod05g0002 351 Gene3D - 98 211 - -
Dod05g0002 351 SUPERFAMILY t-snare proteins 101 313 IPR010989 GO:0016020|GO:0016192
Dod05g0002 351 PANTHER SYNTAXIN 83 350 IPR045242 -
Dod05g0002 351 Pfam SNARE domain 295 346 IPR000727 -
Dod05g0002 351 SMART SynN_4 91 205 IPR006011 GO:0016020
Dod05g0002 351 SMART tSNARE_6 253 320 IPR000727 -
Dod05g0002 351 Pfam Syntaxin-like protein 108 207 IPR006011 GO:0016020
Dod05g0002 351 CDD SNARE_Qa 278 319 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g0002 Dod-Chr5 144722 151378 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g0002 78 339 SNARE and Associated Proteins AT5G46860 77.099 4.00e-141 399
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g0002 - K08488 gsj:114391232 420.239