Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g3220 ATGTTAGCCAATAACTTATCTCCCTCGCCAGAGCGGTTTTCCTGTGCAGAGAGTGGCAGTGCTAGTGCTAGTGCTACTAATAAAAGGAAGAGAAGGCCCGCAGGAACACCAGATCCAGATGCAGAAGTGGTGTCGCTGTCGCCGAAGACGCTGCTGGAATCGGATCGATACGTCTGTGAGATCTGCAACCAGGGATTCCAGAGGGACCAGAACCTGCAGATGCACCGGCGGAGGCACAAGGTGCCGTGGAAGCTGCTGAAGAGGGAGACGCCGGTGGTGAGGAAGCGGGTGTTCGTGTGCCCGGAGCCCACCTGCTTGCACCACGACCCCTGCCACGCTCTCGGCGACCTTGTTGGCATCAAGAAGCACTTCCGCAGAAAGCACAGCAATCACAAGCAATGGGTCTGCCACCGATGCTCCAAAGCCTACGCCGTCCAGTCCGATTACAAAGCCCATCTCAAAACCTGTGGCACCCGGGGCCACTCTTGCGATTGTGGCCGCGTTTTCTCTAGGGTGGAGAGCTTTATAGAGCACCAAGATGCGTGCAACATGGGGCGGGTGGGGGGGGAAGCGCAGTCGCTGCAAGTGCAAGCAGCAGCAGCACCTGCATGCTTGTCTGGAACAGCTTCTAGCCCCAGTCCTTCGAGCGAGACAGCTCTAGTAACAGCCACCACCTTGTTGAACCCGACTGCTACTGCTGAAGCCTCATCCAACAACGACGTCGTCGTCAACGTTAATAATAATAACAAAGCAGTAATCCTCCACCCAAACTTGGAGCTTCGCCTGTCCACAACCACCGCAGCGGCCGTTGATGCAGTTGCCACGGCCAAGGGACACGGCGACGGCACCCAGCTGCAGCTCTCCATTGGGTCGTCGGAGAAAAATGATGATTCGTCATCTGATCGTCACTTGAGGATGGCGATGGCGGAGAAGGCGTATGCGGAGGAGGCAAGGAAGCAAGCCAAGAGGCAGATGGAGCTGGCGGAGCTTGAGTTCTCCAACGCCAGGAGGATCAGACAGCAAGCCCAAGCGGAACTCGGCAAAGCCTATGCCCTCAAACGTCATGCAATCAAACAGATCAATTCAACCATGCTTCAGATCACTTGCCATGCTTGCAAGCTCCAATTTCATGCCCCTCCTGATGCTCCCCTCGACCACACCTCTTTGCTCTTCAGCTACATTTCCTCTGCGGTAACTTCGGAAGGTGCTGCTGCCCAAGTAGACAAGAACCATAATGGAACACGTCTCGCAAAATCCACTTGCTCTTAG 1269 0.5563 MLANNLSPSPERFSCAESGSASASATNKRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRETPVVRKRVFVCPEPTCLHHDPCHALGDLVGIKKHFRRKHSNHKQWVCHRCSKAYAVQSDYKAHLKTCGTRGHSCDCGRVFSRVESFIEHQDACNMGRVGGEAQSLQVQAAAAPACLSGTASSPSPSSETALVTATTLLNPTATAEASSNNDVVVNVNNNNKAVILHPNLELRLSTTTAAAVDAVATAKGHGDGTQLQLSIGSSEKNDDSSSDRHLRMAMAEKAYAEEARKQAKRQMELAELEFSNARRIRQQAQAELGKAYALKRHAIKQINSTMLQITCHACKLQFHAPPDAPLDHTSLLFSYISSAVTSEGAAAQVDKNHNGTRLAKSTCS* 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g3220 422 Gene3D Classic Zinc Finger 119 197 - -
Dod04g3220 422 MobiDBLite consensus disorder prediction 280 300 - -
Dod04g3220 422 ProSitePatterns Zinc finger C2H2 type domain signature. 59 79 IPR013087 -
Dod04g3220 422 SUPERFAMILY beta-beta-alpha zinc fingers 54 80 IPR036236 -
Dod04g3220 422 PANTHER OS03G0310200 PROTEIN 1 401 IPR039288 GO:0009630
Dod04g3220 422 ProSiteProfiles Zinc finger C2H2 type domain profile. 57 79 IPR013087 -
Dod04g3220 422 Gene3D Classic Zinc Finger 35 97 - -
Dod04g3220 422 Coils Coil 304 345 - -
Dod04g3220 422 MobiDBLite consensus disorder prediction 1 44 - -
Dod04g3220 422 PANTHER PROTEIN INDETERMINATE-DOMAIN 16-LIKE 1 401 - -
Dod04g3220 422 SMART c2h2final6 134 161 IPR013087 -
Dod04g3220 422 SMART c2h2final6 98 128 IPR013087 -
Dod04g3220 422 SMART c2h2final6 57 79 IPR013087 -
Dod04g3220 422 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g3220 Dod-Chr4 55885567 55888672 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g3220 17 399 C2H2 Transcription Factor Family AT2G01940 56.863 2.79e-148 427
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Dod04g3220 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g3220 K25871 - gmx:100800187 520.005
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod04g3220 04 55885567 55888672 Dod02g2682 02 58862791 58866391 PCT