Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g3217 ATGGATTGGGATAACAGTCTTAACATACGAAATTGGGGTTACTACGAGGCCACAACGCCCTTTAAGAGCCGTCTTGGGCTATGGCTAATGCTTGATAAACCTCTGCTTGGAGAGCGCAATGCTGCAGTTATGTCTGGCACAACAAATGCCCCATTTCACCAGAGGGACATTGAAACACCAGTGGAAGAGACACCCCTTGAGAAGGCCAACGGAACCAGTAAGAAAAGGCAGCGACCCAAGAAACCCAAGGTGCCCAAGCCTCCCAAGGCGAAGAAGCCCAAGAGAGCGACTCATGTGCCAAAGGATGAGAATACTCCTTCAGTTCAACGACCAAGGACTGCAAGGGAAACTGCTGAAATTGTAATAAACAGGATTAATATGGATATTTCTAGTATTCCTATAGCAGTTTGTTCTTTCACTGGGGCACCTCAACAATGCTATAGATGGGACTCTGGTGGGTAG 462 0.474 MDWDNSLNIRNWGYYEATTPFKSRLGLWLMLDKPLLGERNAAVMSGTTNAPFHQRDIETPVEETPLEKANGTSKKRQRPKKPKVPKPPKAKKPKRATHVPKDENTPSVQRPRTARETAEIVINRINMDISSIPIAVCSFTGAPQQCYRWDSGG* 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g3217 153 MobiDBLite consensus disorder prediction 46 115 - -
Dod04g3217 153 PANTHER PROTEIN BASIC PENTACYSTEINE2-LIKE 53 153 - -
Dod04g3217 153 PANTHER PROTEIN BASIC PENTACYSTEINE2-LIKE 1 57 - -
Dod04g3217 153 MobiDBLite consensus disorder prediction 74 95 - -
Dod04g3217 153 MobiDBLite consensus disorder prediction 56 73 - -
Dod04g3217 153 PANTHER - 53 153 IPR010409 -
Dod04g3217 153 PANTHER - 1 57 IPR010409 -
Dod04g3217 153 SMART GAGA_bind_2 1 153 IPR010409 -
Dod04g3217 153 Pfam GAGA binding protein-like family 60 153 IPR010409 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g3217 Dod-Chr4 55839713 55840353 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g3217 9 153 BBR or BPC Transcription factor family AT2G01930 31.884 2.86e-22 88.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF BBR-BPC Dod04g3217 GAGA_bind 6.2e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g3217 - - qsu:112038547 127.872