Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g3216 ATGGAAGGAGGATCAGAGAACTCGAATTGTGTGTATAGAGAGTGCTTGAGAAACCATGCAGCGAGCCTGGGCAGCTACGCCACCGACGGTTGCGGGGAGTTCACGGTGGACGACATGTCACCGGGTGGCCTACCATGCGCGGCGTGCGGTTGCCACCGCAACTTCCACCGCAAATTGCTCAAGTTTCCAGGTGCCCACGGGAGAGGATCATCAGGGGTCATGAATAACCTCAATATCCAGACGCACACGCACACCCACACCCCGGAAGCCATTATCACTACTGGGAGGGGTGACGAACTGATGATGAGCGAAGAAGCAGTTGGGGGAGTGGGCGTGGGCATGTTGGAGAGCAGCGGGAACAAGAAGCGGTTCAGGTCCAAGTTCAGCGCAGATCAGAAGGAGAAGATGCTGGCCTTCGCGGAGAAGCTGGGTTGGAAGCTGCAGAGGAAGGATCTCGATGACGAGATTGAGAGGTTCTGCCGAGGAGTCGGGGTCACCAGGCAAGTCTTCAAAGTCTGGATGCATAACCATAAGAACTCCTCCTCCTCCTCTTCTGCATCTGCATCTACCGGCAATATCTCCTCTCTCACCCAGTAA 597 0.5578 MEGGSENSNCVYRECLRNHAASLGSYATDGCGEFTVDDMSPGGLPCAACGCHRNFHRKLLKFPGAHGRGSSGVMNNLNIQTHTHTHTPEAIITTGRGDELMMSEEAVGGVGVGMLESSGNKKRFRSKFSADQKEKMLAFAEKLGWKLQRKDLDDEIERFCRGVGVTRQVFKVWMHNHKNSSSSSSASASTGNISSLTQ* 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g3216 198 Pfam ZF-HD protein dimerisation region 10 58 IPR006456 -
Dod04g3216 198 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 121 179 IPR006455 -
Dod04g3216 198 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 11 6 187 - -
Dod04g3216 198 Gene3D - 113 185 - -
Dod04g3216 198 MobiDBLite consensus disorder prediction 178 198 - -
Dod04g3216 198 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 12 59 IPR006456 -
Dod04g3216 198 SUPERFAMILY Homeodomain-like 108 179 IPR009057 -
Dod04g3216 198 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 12 58 IPR006456 -
Dod04g3216 198 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 6 187 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g3216 Dod-Chr4 55767310 55768190 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g3216 12 180 ZF-HD Transcription Factor Family AT4G24660 43.407 9.57e-42 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Dod04g3216 ZF-HD_dimer 8.7e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g3216 - - jre:108993100 237.654
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod04g3216 04 55767310 55768190 Dod02g2684 02 58911727 58912412 PCT