Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g3206 ATGCCCTGCCCTCATTGCAAGACATTCGCCCCACCACGCTGGTGTCCTTGCCGCAAGAAACAAATCACCGCCCATTGTTTTGACTACCACTCTCTTCTTACCTGCGACCAGCAATATGATAAGCTTCTTCAATGTGGGCGTCATTGGTGTGAGCGCATTTGTCATCTGGGTCCTTGTGATCCCTGTCAGGTTTTGATCAATGCCTCTTGCTTTTGTAGTAAACAAATGGACGATATTCTCTGTGGGGACATGACTGTCAAGGGAGAATTATTAGTAGAAGATGAAGTATTTTCTTGCGGTGGAAAGAAACTTGGTTGCGGAAATCATGTCTGTGTTGAGACTTGTCATCAAGGCATCTGTGGGGAGTATGGCTTGTTACCAAGCCGAATTAATACATGCTCTTGCGGGAAAACTAGATTGGAGGAGGAACGCCAGAGTTGTCTAGACTCAATACCTACCTGTCCACAAGTATGTGGCAAGCCCCTTCCTTGTGGGATCCATCATTGTAAAGAGGCATGCCATGCTGGGGATTGTCCTCCTTTGTTGGTTCTGGTCTCCCCCAATTGTCGATGTGGGTCAACTTCCCGAACAGTGGAGTGCTATAAGACAACAATGGAGAATGACAAGTTTACTTGTGAAAAGTCTTATGGACGGAAAAAGAATTATGGAAGGCATCGATGCAGTGAAAGGTGTTGTCCATTTTCTAATCCAAGTAATGAATTGAGTGGGGACTGGGATCCACACTTTTGGTCCATGCCATGTAGAAAGAAGTTAAGGTGTGGCCAGCATGTGTGTGAATCCATGTGTCACAGTGGTCATTGTCCACCTTGTCTCGAAACTATATTTACTGATTTAACATGTGCTTGTGGCAAAACTTCAGTCCCTCTTCTACTATCTTGTGGTACACCGCTTCCCTCATGTCAGCTTCCATGTTCAGTTCCTCAGCCTTGTAGTCATCATCCAGCCTCCCACAGCTGCCATTTTGGAGACTGCCCTCCTTGTTCATTGCTTATAGCAAAAGAATGTATTGGCGAGCATGTAGTTCTTAGGAATATTCCTTGCAGTTCAAAGGATATCAGGTGTAATAAGCTCTGTGGGAAGACCAGACAATGTGGCTTACTGCTTGTGGCAAAGTATGTCATCCCCCATCTTGTGAAAACTCATCTGCGGTGCAAGGTGTCCTAG 1185 0.4565 MPCPHCKTFAPPRWCPCRKKQITAHCFDYHSLLTCDQQYDKLLQCGRHWCERICHLGPCDPCQVLINASCFCSKQMDDILCGDMTVKGELLVEDEVFSCGGKKLGCGNHVCVETCHQGICGEYGLLPSRINTCSCGKTRLEEERQSCLDSIPTCPQVCGKPLPCGIHHCKEACHAGDCPPLLVLVSPNCRCGSTSRTVECYKTTMENDKFTCEKSYGRKKNYGRHRCSERCCPFSNPSNELSGDWDPHFWSMPCRKKLRCGQHVCESMCHSGHCPPCLETIFTDLTCACGKTSVPLLLSCGTPLPSCQLPCSVPQPCSHHPASHSCHFGDCPPCSLLIAKECIGEHVVLRNIPCSSKDIRCNKLCGKTRQCGLLLVAKYVIPHLVKTHLRCKVS* 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g3206 394 PANTHER NF-X1-TYPE ZINC FINGER PROTEIN NFXL1 2 377 - -
Dod04g3206 394 CDD NF-X1-zinc-finger 253 296 - -
Dod04g3206 394 SMART znfxneu3 45 64 IPR000967 GO:0005634|GO:0008270
Dod04g3206 394 SMART znfxneu3 317 336 IPR000967 GO:0005634|GO:0008270
Dod04g3206 394 SMART znfxneu3 106 135 IPR000967 GO:0005634|GO:0008270
Dod04g3206 394 SMART znfxneu3 260 279 IPR000967 GO:0005634|GO:0008270
Dod04g3206 394 SMART znfxneu3 164 191 IPR000967 GO:0005634|GO:0008270
Dod04g3206 394 Pfam NF-X1 type zinc finger 323 335 IPR000967 GO:0005634|GO:0008270
Dod04g3206 394 Pfam NF-X1 type zinc finger 164 180 IPR000967 GO:0005634|GO:0008270
Dod04g3206 394 Pfam NF-X1 type zinc finger 260 277 IPR000967 GO:0005634|GO:0008270
Dod04g3206 394 Pfam NF-X1 type zinc finger 223 233 IPR000967 GO:0005634|GO:0008270
Dod04g3206 394 Pfam NF-X1 type zinc finger 45 63 IPR000967 GO:0005634|GO:0008270
Dod04g3206 394 Pfam NF-X1 type zinc finger 106 121 IPR000967 GO:0005634|GO:0008270
Dod04g3206 394 PANTHER NUCLEAR TRANSCRIPTION FACTOR, X-BOX BINDING 1 NFX1 2 377 IPR034078 GO:0003700
Dod04g3206 394 CDD NF-X1-zinc-finger 154 202 - -
Dod04g3206 394 CDD NF-X1-zinc-finger 35 83 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g3206 Dod-Chr4 55693636 55694820 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-X1 Dod04g3206 zf-NF-X1 11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g3206 K12236 - gmx:106799700 643.269