Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g3174 ATGGACCCAATTTCGATCTCTCATCCGCCCACAGTGCCGGGCATCTCCACAGCCGTCCCCTTCACCCTCGAACCGAACAATCATCATGCCGCTTCCTTCTCCTTCACCAACCCCAACCCCAACCCCACTCCTCCACCTCCTCCCCCTCCTGCTCCTGCCACCGCCCCAGCTCCTAACCACCCTCCTTATGCTGAGATGATATACACAGCAATAGGGGCGCTGAAGGAGAAGGACGGGTCGAGCAAGAGAGCGATAGGGAAGTACATAGAGCAGGTGTACAGGGACCTCCCACCCACGCACTCTGACTTGCTCGCCCAGCACCTCAAGCACCTCAAGTCCAACGGTCTCCTCGTCATGGTCAAGAAATCCTACATGCTCCCCAGATCTGAATCTGAATCTGATCCTCATGCACCGCCACTTCCCCCTTCTACCCTCCAAACCCCAAGGGGCCGTGGCCGCCCCCCTAAGCCCAAGCCCCACCCACTACCCCAGCCTTTTTACCAGCACCAGCACCAGCACCAGCCACATCTCCAACTCCAACCCCACCCGCTGCCCCAAAATGCGGAGCCCGTCTGGGCTGCTCTTGGGCTTGGGGATGACCCCACTGCTGCGGCAGCTGCCACTGCCACTGCAACTGCAACTGCTGCGACTCCTATTACTCAAGTCAAGAGAAGGGGCCCGGGTCGCCCTCCAAAAATTGGTGTAGCGGGTGTGGGCCCGGCGGTCCCAGTGAGAAGAGGGCGTCCGCCTGGGACGGGGAGACCTAGGTTGCTGAAGAGGGTCGGCCGTCCTCCCAAGCCCAAGTCTTTGTCGGCAATGTCCAATGGGCTCAAGCGACGTCCGGGCCGCCCGCCCAAAAACCAATCAAAGCTCATGGTCATTCCATTTGCCGCTCCTGCTGCTGCTGCTGCTGCTCCTCCTCCTGCCCCCGGCGTGCCCACAGTGCCGCCAACCTTTCCAACTGATTCCGCACCCATTGGGTCTCCGAGGCCCAGAGGGAGGCCCAGGAAGAATTCTGCAGCAGTGCCGGTGGGTCTGGGAGCTCCAGCCCGAGGTGGCACCCGTGGCCGTGGCCGGGGACGCGGGGTGTTGCCCGTGATGAGGCAGGGTCGCCCTCCAAAGCTTGCTGTGGTAGGGAGGTCCAAGAGGCCTGTGGGCCGCCCTAAGGGATCAACTGCTGCTGCTACAGCGCAAAAGGTTGCTAGTAAAGAACTAAGGAGGAAACTGGAATACTTTCAATCCAAAGTGAAGGAGTCTCTTGGCGTGCTGAAGCCATATTTCAACCATGAAAGTCCAGTCACTGCACTTGCAGCAATCCAGGAGTTGGAAACACTGGCAACTTCGGAGCTTAATGCACCACCATTAAGGGAAGAAACACAGCCACTGCAGCAACTGCCCCAGGAGCCACAGCCGCAGCCACAAGCTGCCACAGCTGCAGATGTACCAACAGCAATATCCCCAGTTACCACCGGAGACTGCAACTGCAGCAACTTCTTCCAACACCATGCATCTGCCCCAAGCTAG 1524 0.5945 MDPISISHPPTVPGISTAVPFTLEPNNHHAASFSFTNPNPNPTPPPPPPPAPATAPAPNHPPYAEMIYTAIGALKEKDGSSKRAIGKYIEQVYRDLPPTHSDLLAQHLKHLKSNGLLVMVKKSYMLPRSESESDPHAPPLPPSTLQTPRGRGRPPKPKPHPLPQPFYQHQHQHQPHLQLQPHPLPQNAEPVWAALGLGDDPTAAAAATATATATAATPITQVKRRGPGRPPKIGVAGVGPAVPVRRGRPPGTGRPRLLKRVGRPPKPKSLSAMSNGLKRRPGRPPKNQSKLMVIPFAAPAAAAAAPPPAPGVPTVPPTFPTDSAPIGSPRPRGRPRKNSAAVPVGLGAPARGGTRGRGRGRGVLPVMRQGRPPKLAVVGRSKRPVGRPKGSTAAATAQKVASKELRRKLEYFQSKVKESLGVLKPYFNHESPVTALAAIQELETLATSELNAPPLREETQPLQQLPQEPQPQPQAATAADVPTAISPVTTGDCNCSNFFQHHASAPS* 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g3174 507 Pfam linker histone H1 and H5 family 60 121 IPR005818 GO:0000786|GO:0003677|GO:0006334
Dod04g3174 507 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 59 128 IPR005818 GO:0000786|GO:0003677|GO:0006334
Dod04g3174 507 MobiDBLite consensus disorder prediction 127 184 - -
Dod04g3174 507 PANTHER HISTONE H1 42 345 - -
Dod04g3174 507 MobiDBLite consensus disorder prediction 1 20 - -
Dod04g3174 507 PRINTS AT-hook-like domain signature 327 337 IPR017956 GO:0003677
Dod04g3174 507 PRINTS AT-hook-like domain signature 276 287 IPR017956 GO:0003677
Dod04g3174 507 PRINTS AT-hook-like domain signature 148 158 IPR017956 GO:0003677
Dod04g3174 507 CDD H15 63 123 IPR005818 GO:0000786|GO:0003677|GO:0006334
Dod04g3174 507 PRINTS Histone H5 signature 46 67 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Dod04g3174 507 PRINTS Histone H5 signature 143 157 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Dod04g3174 507 PRINTS Histone H5 signature 73 90 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Dod04g3174 507 SMART AT_hook_2 148 160 IPR017956 GO:0003677
Dod04g3174 507 SMART AT_hook_2 382 394 IPR017956 GO:0003677
Dod04g3174 507 SMART AT_hook_2 224 236 IPR017956 GO:0003677
Dod04g3174 507 SMART AT_hook_2 329 341 IPR017956 GO:0003677
Dod04g3174 507 SMART AT_hook_2 278 290 IPR017956 GO:0003677
Dod04g3174 507 SMART AT_hook_2 258 270 IPR017956 GO:0003677
Dod04g3174 507 MobiDBLite consensus disorder prediction 302 367 - -
Dod04g3174 507 MobiDBLite consensus disorder prediction 453 481 - -
Dod04g3174 507 SUPERFAMILY "Winged helix" DNA-binding domain 57 136 IPR036390 -
Dod04g3174 507 MobiDBLite consensus disorder prediction 27 60 - -
Dod04g3174 507 MobiDBLite consensus disorder prediction 167 181 - -
Dod04g3174 507 MobiDBLite consensus disorder prediction 38 59 - -
Dod04g3174 507 MobiDBLite consensus disorder prediction 222 289 - -
Dod04g3174 507 MobiDBLite consensus disorder prediction 448 481 - -
Dod04g3174 507 MobiDBLite consensus disorder prediction 302 324 - -
Dod04g3174 507 SMART h15plus2 57 123 IPR005818 GO:0000786|GO:0003677|GO:0006334
Dod04g3174 507 Gene3D - 56 136 IPR036388 -
Dod04g3174 507 PANTHER HISTONE H1-LIKE 42 345 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g3174 Dod-Chr4 55395354 55398982 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g3174 66 129 Single Myb Histone (SMH) Gene Family AT1G49950 46.875 1.85e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g3174 - - aprc:113856313 391.349