Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g3161 ATGGATATCGAAGAAGACATCCGTTCTTTACAGCTTGACTCAGCAGCAGAAGACAATAATGGGGTGGTAAATCCAGATGATGGAAAGCCAGAAGAAGTTGATAAATCAGAAAAGATTGAAGAAGTTGATAAATCTGATAAGATGGAAGAAGATCCTAAGCAGGAGGCTGAGGCACAGCCTGTTCAGGCTGAGCCAGAAGTGAAAGATAAAGGAATTCCTTCTGTGCAAGATGAAGATGAGCTGGAGCTGAAAAAAAGACACTTAAATGTTGTGTTCATTGGCCATGTTGATGCTGGTAAGTCTACAACTGGAGGCCAGATACTTTTCCTCAGTGGTCAGGTTGATGACAGGACTATACAAAAATATGAGAAAGAAGCTAAAGACAAAAGTCGCGAAAGCTGGTATATGGCTTATATAATGGACACAAATGAGGAGGAGAGGGTGAAGGGAAAAACAGTTGAAGTTGGAAGAGCACATTTTGAGACAGAGACAACAAGGTTTACAATTTTGGATGCACCTGGTCACAAAAGCTATGTTCCTAATATGATCAGTGGTGCATCTCAAGCAGATATTGGAGTGTTGGTAATTTCTGCTCGAAAGGGAGAATTTGAAACTGGATATGAGAGAGGTGGACAAACTCGTGAGCATGTTCAGCTTGCAAAAACACTTGGTGTGTCTAAGTTGCTTGTTGTTGTGAATAAAATGGATGAACCAACTGTGAACTGGTCAAAAGAAAGGTATGATGAAATTGAGTCAAAGATGATTCCGTTTCTGAGGCAATCAGGATACAATGTCAAGAAAGATGTCCTTTTTTTACCGATATCTGGGCTGATGGGTACCAACATAAAAACAAGAGTGGATAAAAGCACTTGTCCATGGTGGGACGGTCCTTGCTTATTTGAAGCACTTGATGCTGTTGAAGTTCCTCTACGAGATCCCAAAGGTCCTTTCAGGATGCCTATACTTGATAAATTCAAAGACATGGGAACTGTTGTTATGGGAAAAGTGGAATCTGGTAATGTTCGTGAGGGAGATTCCTTGTTGGTCATGCCAAATAAGGATCAAGTTAAAGTTGTTGGTATATTTATTGATGATGATCGGGTTAAACGTGCTGGACCGGGTGAAAATTTACGGATCAGAATATCTGGTGTTGAAGAAGACGACATTTTATCGGGGTTTGTCCTGTCTAGTGTTGCAAACCCAATACCAGCTGTTACCGAGTTTGTTGCTCAGCTGCAAATCCTTGAATTGTTGGACAATGCTATTTTCACTGCTGGGTACAAGGCAGTTCTACATATCCACTCTGTAGTTGAAGAATGTGAGATTGTTGAGCTGTTGCAGCAAATTGATCCAAAGACAAAGAAACCAATGAAAAAGAAAGTTCTCTTTGTGAAGAATGGTGCTGTTGTTGTGTGCCGTGTCCAGGTTAGTAATACGATATGCATTGAAAAGTTTTCTGATTTTCCGCAACTAGGGAGATTCACTCTTCGTACTGAAGGAAAAACTGTTGCTGTGGGAAAAGTCACGGATGTGTAA 1536 0.4076 MDIEEDIRSLQLDSAAEDNNGVVNPDDGKPEEVDKSEKIEEVDKSDKMEEDPKQEAEAQPVQAEPEVKDKGIPSVQDEDELELKKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERVKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGYERGGQTREHVQLAKTLGVSKLLVVVNKMDEPTVNWSKERYDEIESKMIPFLRQSGYNVKKDVLFLPISGLMGTNIKTRVDKSTCPWWDGPCLFEALDAVEVPLRDPKGPFRMPILDKFKDMGTVVMGKVESGNVREGDSLLVMPNKDQVKVVGIFIDDDRVKRAGPGENLRIRISGVEEDDILSGFVLSSVANPIPAVTEFVAQLQILELLDNAIFTAGYKAVLHIHSVVEECEIVELLQQIDPKTKKPMKKKVLFVKNGAVVVCRVQVSNTICIEKFSDFPQLGRFTLRTEGKTVAVGKVTDV* 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g3161 511 PANTHER TRANSLATION FACTOR 2 505 - -
Dod04g3161 511 MobiDBLite consensus disorder prediction 24 57 - -
Dod04g3161 511 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 141 156 IPR031157 -
Dod04g3161 511 Gene3D Translation factors 314 399 - -
Dod04g3161 511 PRINTS GTP-binding elongation factor signature 168 178 IPR000795 GO:0003924|GO:0005525
Dod04g3161 511 PRINTS GTP-binding elongation factor signature 228 237 IPR000795 GO:0003924|GO:0005525
Dod04g3161 511 PRINTS GTP-binding elongation factor signature 89 102 IPR000795 GO:0003924|GO:0005525
Dod04g3161 511 PRINTS GTP-binding elongation factor signature 184 195 IPR000795 GO:0003924|GO:0005525
Dod04g3161 511 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 405 511 IPR009001 -
Dod04g3161 511 PANTHER BNAA06G12300D PROTEIN 2 505 - -
Dod04g3161 511 CDD EF1_alpha 89 309 - -
Dod04g3161 511 Gene3D Translation factors 404 511 - -
Dod04g3161 511 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 76 320 IPR027417 -
Dod04g3161 511 Pfam Elongation factor Tu GTP binding domain 85 298 IPR000795 GO:0003924|GO:0005525
Dod04g3161 511 CDD eRF3_II 316 397 - -
Dod04g3161 511 SUPERFAMILY Translation proteins 308 401 IPR009000 -
Dod04g3161 511 CDD eRF3_C_III 403 511 - -
Dod04g3161 511 Gene3D - 68 309 IPR027417 -
Dod04g3161 511 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 85 314 IPR000795 GO:0003924|GO:0005525
Dod04g3161 511 Pfam Elongation factor Tu domain 2 329 395 IPR004161 GO:0005525
Dod04g3161 511 MobiDBLite consensus disorder prediction 1 76 - -
Dod04g3161 511 Pfam Elongation factor Tu C-terminal domain 402 511 IPR004160 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g3161 Dod-Chr4 55254597 55262022 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g3161 85 511 Eukaryotic Initiation Factors Gene Family AT5G60390 37.209 7.70e-95 293
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g3161 K03267 - gmx:100793653 895.96