Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g3139 ATGCGTGCTGTTACAGAGACAGCAACAGAACACATCAAATGGAGAAGACAGAGGAACCAATTCAGCCATCACCACCACCCAAACATGGCAGAAGAAACAGATCCAATCCCAAACCCACAAATCCCTTCCATAATCCAATCCACACGCTGCAAGTCCACCATTTCCTCTCTTCTCTCCACTTTCTCCAACAACACCACCTCCAATGAGGCCACCATCAATGGCACCTCTCAGAGCAGAAAAAAGAGCAACTTTTCTGCAGCAGCAACCTTCAGGGGACTCGGCTGCACCGCCGGGGCGTCACAGCAGGTGTCGGTGCCGGCGGTGATCCGAACCTCCGCTGATTGGCAAGGGAAGAAGGCCAGAAAGAAGAAGCACAAGAGAAGCAGCAACAACAGCAAGAACAGTAGCAAGGCTTGTAATGGTGGTGGTGGTGGTGTTGTTGATGGTTCCAATCCTGCAACTTGTGTGGATTTTCAGGATGTTTGGTGTGGCCCTGGAATTGGGTTCTCTGCTGATGCTGCTGCATCTGTTGATTGTGTTGTGGCAAGGAAGAATGTGTCTTCAAGAGGCAAAATTGATGTGGACAAGGTTAATCACAGAGAGCGTTCTTCATCTAATTATTTGGGAAGGCGCACTGTGAATCCAGAACCCATCTCTTTTTTGGACACTGATGATCCTGACATTTTCACAGCACGCTCTGAGTCTTTTGGACCTGCCACTTACTATCGCCACATTAGGGATCCTTCCTCTGATGGTTTTGCTGAGGTTATGATGCTTCAAGGAGGTCTAATAATGGGGGGACGATTAAATTCACATGACCAATTCAGAGACTGGAGACTTGATGTTGATAACATGTCATATGAGCAATTGCTTGAGCTTAGTGAGAGAATCGGTTATGTGAACACTGGACTCAAAGAAGATGAGATGGGACACAACATAAGGAAGACTAAGCTTCAATTTGCAGATGATGCATCAAAGCATCAAGTAGACAAAACGTGCAGCATTTGTCAGGAAGAGTATGAAGCAGGTGATGAAGTGGGGAGGTTAAACTGTGAACACAGCTATCACTTTCATTGTATAAAACAATGGGTAGCTCAGAAGAATTTCTGCCCAGTCTGTAAGCAACAAGTTGTGGCTCGCAACTGA 1146 0.4651 MRAVTETATEHIKWRRQRNQFSHHHHPNMAEETDPIPNPQIPSIIQSTRCKSTISSLLSTFSNNTTSNEATINGTSQSRKKSNFSAAATFRGLGCTAGASQQVSVPAVIRTSADWQGKKARKKKHKRSSNNSKNSSKACNGGGGGVVDGSNPATCVDFQDVWCGPGIGFSADAAASVDCVVARKNVSSRGKIDVDKVNHRERSSSNYLGRRTVNPEPISFLDTDDPDIFTARSESFGPATYYRHIRDPSSDGFAEVMMLQGGLIMGGRLNSHDQFRDWRLDVDNMSYEQLLELSERIGYVNTGLKEDEMGHNIRKTKLQFADDASKHQVDKTCSICQEEYEAGDEVGRLNCEHSYHFHCIKQWVAQKNFCPVCKQQVVARN* 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g3139 381 MobiDBLite consensus disorder prediction 117 131 - -
Dod04g3139 381 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 5 380 IPR045191 GO:0061630
Dod04g3139 381 ProSiteProfiles Zinc finger RING-type profile. 333 374 IPR001841 -
Dod04g3139 381 PANTHER C3HC4-TYPE RING ZINC FINGER PROTEIN 5 380 - -
Dod04g3139 381 MobiDBLite consensus disorder prediction 17 37 - -
Dod04g3139 381 SUPERFAMILY RING/U-box 325 378 - -
Dod04g3139 381 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 300 379 IPR013083 -
Dod04g3139 381 Pfam Ring finger domain 332 374 IPR001841 -
Dod04g3139 381 MobiDBLite consensus disorder prediction 113 144 - -
Dod04g3139 381 SMART ring_2 333 373 IPR001841 -
Dod04g3139 381 CDD RING-H2_PA-TM-RING 332 374 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g3139 Dod-Chr4 55075011 55079188 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g3139 10 288 C3H Transcription Factor Family AT1G73760 42.662 1.90e-55 182
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g3139 - - gmx:100819907 518.079