Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g3138 ATGGGTAAGAAGAAGAAGAGGGTTTCATCGAAGGTGTGGTGCTATTACTGCGATCGGGAATTCGACGACGAGAAGATCTTGGTTCAGCATCAGAAGGCCAAGCACTTCAAGTGCCATGTCTGCCACAAGAAGCTCTCCACCGCCGGCGGCATGGCCATCCACGTCCTCCAGGTTCACAAGGAATCCGTCACCAAGGTGCCCAATGCAAAACCTGGGAGAGAGAGCACAGATATTGAAATATATGGAATGCAAGGGATTCCACCAGATGTCTTGGCTGCTCATTATGGAGAAGAAGATGATGAAGTTCCATCAAAGGCAGCCAAGGTGGATATACCATCGACGCAGCTTGTAGGTGGAATGGTGCCACCTCCATTGGCCACAGGATATCCTCCTCGACCAACATTGGGCACAATACCACCAGTTTATAATCCAAGTGTACCTGTCCCTCCAAACACATGGCCAGTTCCACCTCGACCTCAGCCATGGTTTCCTCAACCTCCAAGTGTTTCAATTCCTCCTTCTGCCCCATACACACAGCAGCCATTATTTCCTGTGCAGAATGTGAGGCCACCCTTGCTGTCATCAGCTGTTTCTCCTGCGCCCCAAACTCAGATCACCCCTCCTGGTTTGCCTACATCTACACCTTCCATCCCCGTTTCACAACCTTTGTTTCCTGTTGTTGGAAATAACCATACAACAACTCAAAGTTCAACATTTTCTGCTGCCCCTTTATCTTCAAGTGTTCCATCAATAACACCAATTCCTCCTCCGAATGTCTCTGTTGATGCACATTTGGGTGCCAACACCTCTTTAACAAATGCTTATCAGGCAATAGGGGTTCCAGGTGGGACAGCAGGTAACTCACACTCTTATGCATCTGGTCCAAATACTGGTGGCCCTTCAATTGGACCTCCCCCAGTAATTTCAAACAAAGCACCTGCACCTCAGCCTGCTGCTAACGAAGTCTACTTGGTTTGGGATGATGAGGCAATGTCCATGGAGGAAAGGAGAATGTCTTTGCCAAAATATCAGGTGCATGATGAAACTAGCCAGGTAAGTCATACTACCTCTGTAATAGATGGAGTTGCTTTCACATCTAACCAGATGAGTAGGCTTTATGCTTCCTGTTTTCAGATTCAGTTGTTTAGCCATTGTTTCCTATTTATAGAGGTACACTCCATAAATTTTTAA 1191 0.4702 MGKKKKRVSSKVWCYYCDREFDDEKILVQHQKAKHFKCHVCHKKLSTAGGMAIHVLQVHKESVTKVPNAKPGRESTDIEIYGMQGIPPDVLAAHYGEEDDEVPSKAAKVDIPSTQLVGGMVPPPLATGYPPRPTLGTIPPVYNPSVPVPPNTWPVPPRPQPWFPQPPSVSIPPSAPYTQQPLFPVQNVRPPLLSSAVSPAPQTQITPPGLPTSTPSIPVSQPLFPVVGNNHTTTQSSTFSAAPLSSSVPSITPIPPPNVSVDAHLGANTSLTNAYQAIGVPGGTAGNSHSYASGPNTGGPSIGPPPVISNKAPAPQPAANEVYLVWDDEAMSMEERRMSLPKYQVHDETSQVSHTTSVIDGVAFTSNQMSRLYASCFQIQLFSHCFLFIEVHSINF* 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g3138 396 ProSitePatterns Zinc finger C2H2 type domain signature. 14 35 IPR013087 -
Dod04g3138 396 SMART c2h2final6 12 35 IPR013087 -
Dod04g3138 396 SMART c2h2final6 36 59 IPR013087 -
Dod04g3138 396 PANTHER ZINC FINGER PROTEIN 207 1 365 - -
Dod04g3138 396 ProSiteProfiles Zinc finger BED-type profile. 7 66 IPR003656 GO:0003677
Dod04g3138 396 PANTHER BUB3-INTERACTING AND GLEBS MOTIF-CONTAINING PROTEIN ZNF207 1 365 - -
Dod04g3138 396 ProSitePatterns Zinc finger C2H2 type domain signature. 38 59 IPR013087 -
Dod04g3138 396 Gene3D Classic Zinc Finger 1 66 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g3138 1 391 C2H2 Transcription Factor Family AT1G30970 59.701 2.93e-146 419
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Dod04g3138 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g3138 - - gsj:114421245 608.601