Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g3122 ATGGTGAAATCGGGGGACAATGGTTCTGGTTCTGTGGCTCCTTTCCTGAACAAGTGCTACGACATGGTGGAGGACCCCTCCACCGACTCCGTCATCTCGTGGAGCCAAGGCGGCGGAGACAGCTTCGTCATATGGGATATGACCCAATTCTCCCTCACTCTGCTCCCCAACTATTTCAAGCACAACAACTTCTCCAGCTTCATCCGCCAGCTCAATATCTATATGACTGTAAAATTTATCAGGGATTCAGGAAGGTTGATACAGATCGCTGGGAATTTGCCAATGACAAATTTGTCAGGGGTCAAAAGCATTTGCTGA 318 0.4874 MVKSGDNGSGSVAPFLNKCYDMVEDPSTDSVISWSQGGGDSFVIWDMTQFSLTLLPNYFKHNNFSSFIRQLNIYMTVKFIRDSGRLIQIAGNLPMTNLSGVKSIC* 106
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g3122 105 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-8 1 84 - -
Dod04g3122 105 Pfam HSF-type DNA-binding 15 79 IPR000232 GO:0003700|GO:0006355|GO:0043565
Dod04g3122 105 PRINTS Heat shock factor (HSF) domain signature 15 38 IPR000232 GO:0003700|GO:0006355|GO:0043565
Dod04g3122 105 PRINTS Heat shock factor (HSF) domain signature 67 79 IPR000232 GO:0003700|GO:0006355|GO:0043565
Dod04g3122 105 PRINTS Heat shock factor (HSF) domain signature 54 66 IPR000232 GO:0003700|GO:0006355|GO:0043565
Dod04g3122 105 Gene3D - 8 95 IPR036388 -
Dod04g3122 105 SMART hsfneu3 11 92 IPR000232 GO:0003700|GO:0006355|GO:0043565
Dod04g3122 105 SUPERFAMILY "Winged helix" DNA-binding domain 11 87 IPR036390 -
Dod04g3122 105 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 1 84 IPR027725 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g3122 Dod-Chr4 54891076 54892298 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g3122 1 74 HSF AT1G67970 68.354 2.63e-28 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Dod04g3122 HSF_DNA-bind 6.1e-22 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g3122 K09419 - pvy:116145018 120.553