Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g3115 ATGGCCAATTTTCATTCTGAGACTGATAATGTCAATGTGGCTCCTAATCTTGGTCAACTCCCCTCAGGTCTCAGGATTCTTGTGGTTGATGATGACGTTACTATATTGAAAACCATTGAACAAATGTCCGCTCAATGCCATTATCATGTGACCACATGCACTGAGGCTGCTGTTGCTTTGAATCTTCTGAGGGAGAGAAAAGACTCTTTTGATGTGGTGATAAGTGATGTGCACATGAAAGGCATTGATGGCTATAAGTTCCTTCAGCATGTTGACCAAGAATTCAATCTTCCTGTTATTATGATGTCTGCAGATTCAAGCAGTGCCGTGACGGAGGGTATCAGACATGGGGCTTGCCATTATTTGATTAAACCTGTTCATGAGGATGATCTCAGGAACATATGGCAGCATGTGATTGATAGGAAGACATGGAATCATCATAAGAATAAAGAACATGAAATTGTTGGCGTATTGGAATATAATGATCCCAACAAAAGGGGTAACAATGATGATGCTGATTATACTTCTTCTGTTACTGATGCAAATGAAGGAATATTAGTTGGAGACAGAAGAAAGAGGAGCTCATCAGGAGAAGAAGGTGATGCTGTTGACGAGATGGGAGATGATCCTCCTGTCCCAAATAAGAAGCCCCGTTTTGTATGGACGAGTGATCGCCATCAACAATTCGTCAATGCTGTAATCCAACTCGGGCCGAAGGCTGTGCCAAAGAGAATTCTGGAATTGATGAATATCCCTGATTTGACAAGAGAAAATGTCGCCAGTCATTTGCAGAAATTCAGACTTCATTTGAAGAAAAAAAGTGATGAGACACAACAACAGAATGTGGTGCTAAATGGGACTACAGATTATTCTAAGTTGCGTGCATCTAGAAGATTCAACATGCAAGCTTTGGCTGACGCAGGCCATCATGTTTCCCCTCAAACACAAGCAAGCCTTCATAATCATGCTGAGCTCACAAATTACCCAGCATCAGGTAACATGAGGCCAAGAGAGAACCACGTTGCCCTTATGAAACCACCATCAGTACAAGAGCCCAACCATTCCCCCCATGCACAAGCACATGGTATATCAACATATGATTCCCAGAATTTTGCTCAGCCCCTCATGGCAGTAGATGATGCTTCTTCAGGATATGTGGCGTGGGAATGGCCTCCAATATCTAATGCAATTGGTTCATCAGTGGGTCTCAACAACGATATGCTGATGAACATAATGCAGCAGGAGTATCGGCAAAAACAAGAGCAACTGCAGCTGCAGCAGTCACTGATGATGCATGATTATCCGATCTATCCAGATTCAGTCAGTGTTCAACCATCTTACTTGGTGGGTCCCTCTCAACCTTATGAAACTTTGCAAGTGGGAATTACTCCTGCTTCCGTCAACTACAATTACAGCTTTGGTAGGAACTCTCTTATTGATCATAGCACATTTTTACCTCAACCGAACTACTCAATGGGTACTACTACTGCTGAACTATGTGGGTATACTGCCACCCCAGTCTCCGTTTCTCTGCCGATGCTGGGCTCAAGAACCCAGCAGCTTCATAATGGTGCTGTGAGACCATTTCCTGGTCTTCCACCTGTGTCTGATGCACAAGTTCTCTATGGTTCCGGATCCATTGATTCACTTCATCATCATGAAGGTCAAGTATCTATTCAAAGTCATAGTCATATTGACACAATGAAGGAGCAGCCAAATTTTATGGACAGTGCACAAGTGGACCATCCGATCCGACAAAGATATATCTATCCATCGTGA 1779 0.4311 MANFHSETDNVNVAPNLGQLPSGLRILVVDDDVTILKTIEQMSAQCHYHVTTCTEAAVALNLLRERKDSFDVVISDVHMKGIDGYKFLQHVDQEFNLPVIMMSADSSSAVTEGIRHGACHYLIKPVHEDDLRNIWQHVIDRKTWNHHKNKEHEIVGVLEYNDPNKRGNNDDADYTSSVTDANEGILVGDRRKRSSSGEEGDAVDEMGDDPPVPNKKPRFVWTSDRHQQFVNAVIQLGPKAVPKRILELMNIPDLTRENVASHLQKFRLHLKKKSDETQQQNVVLNGTTDYSKLRASRRFNMQALADAGHHVSPQTQASLHNHAELTNYPASGNMRPRENHVALMKPPSVQEPNHSPHAQAHGISTYDSQNFAQPLMAVDDASSGYVAWEWPPISNAIGSSVGLNNDMLMNIMQQEYRQKQEQLQLQQSLMMHDYPIYPDSVSVQPSYLVGPSQPYETLQVGITPASVNYNYSFGRNSLIDHSTFLPQPNYSMGTTTAELCGYTATPVSVSLPMLGSRTQQLHNGAVRPFPGLPPVSDAQVLYGSGSIDSLHHHEGQVSIQSHSHIDTMKEQPNFMDSAQVDHPIRQRYIYPS* 593
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g3115 592 PANTHER TWO-COMPONENT RESPONSE REGULATOR 20 459 IPR045279 GO:0009736
Dod04g3115 592 Gene3D - 213 273 - -
Dod04g3115 592 Pfam Response regulator receiver domain 26 134 IPR001789 GO:0000160
Dod04g3115 592 ProSiteProfiles Response regulatory domain profile. 25 139 IPR001789 GO:0000160
Dod04g3115 592 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 216 269 IPR006447 GO:0003677
Dod04g3115 592 CDD REC_typeB_ARR-like 26 139 - -
Dod04g3115 592 MobiDBLite consensus disorder prediction 188 217 - -
Dod04g3115 592 Coils Coil 409 429 - -
Dod04g3115 592 SUPERFAMILY CheY-like 22 146 IPR011006 -
Dod04g3115 592 Gene3D - 24 205 - -
Dod04g3115 592 SUPERFAMILY Homeodomain-like 214 272 IPR009057 -
Dod04g3115 592 PANTHER TWO-COMPONENT RESPONSE REGULATOR ARR14 20 459 - -
Dod04g3115 592 SMART REC_2 24 135 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g3115 Dod-Chr4 54829271 54831858 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g3115 17 299 Response Regulator Gene Family AT2G25180 44.330 1.76e-63 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Dod04g3115 Response_reg 1.4e-20 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g3115 - K14491 gmx:100817125 446.432