Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g3112 ATGCTCGCAAGAAGAAAATTCCTCAACTTGATCTCAACCCAATTCGTTTCTCATCAATTCAATGCAGTTTCAAAACTAACACAACTTCCTTCACACCCTTCTTCCGAAATCCCCAAAACCCTAAACTCTTTTAGGGTTTTGCTATTGTGCTCATGGAATTCAACGCAAGCATCGAAATTCCCCGAATACGAGATGCCATCTGTGACGTGGGGCGTGATTCAGGGCCGCAAGGAGAAGCTGGTGTCGCGGGTAATCGTATTCGACTACCTCAAGGGTTTGGGAATCATCCCTGATGAGTTGCAGGACCTTGAGCTTCCTTCAACCGTTGAGGTGATGAGGGAGCGCGTTGAGTTCCTCCAGAAATTAGGGTTAACAATTGATGACATCAACGATTACCCTTTGATGCTGGGTTGCAGCGTGAGGAAGAACATGATTCCCGTTTTGGGCTACTTGGAAAAAATTGGGATCCCAAGGTCCAAACTTGGCCAATTTATTAAGAGCTACCCTCAAGTGTTGCATGCTAGTGTGATTGTTGAGCTTGTTCCTGTTGTGAAGTTCCTTAGGGGGCTTGATGTGGAGAGGGAGGATATTGGGTATGTGTTGCAGAAGTACCCTGAACTTCTTGGGTTCAAGCTTGAGGGTACTATGAGTACCTCAGTGGCTTATCTTGTTAGTATTGGTGTTAATCCTAGGGATATTGGTCCCATGGTGACTCAGTATCCTTATCTTTTGGGGATGAGAGTTGGGACTGTGATTAAGCCTTTGATTGATTACTTGATCTCTTTGGGGCTGCCAAAGAAGATTTTGGCTAGGATGTTGGAAAAAAGAGCCTATTTGCTTGGCTATGATCTTGACGAGACTGTGAAGCCAAATGTGGATTGCTTGATTAGTTTTGGAATAAGGAAGGAATGTTTGCCTTCAGTTATTGCTCAGTATCCTCAGATTCTTGGATTGCCACTAAAGGCTAAGTTGTCTTCTCAGCAGTATTTTTTCAGTTTGAAGCTTAAGATTGATCCTGAAGGATTTGCAAGAGTGGTGGAGAAGATGCCACAGGTGGTTAGCCTTCACCAAAATGTGATCATGAAGCCGGTTGATTTCCTCCTTGGGAGGGTAATACCGCCCCATGATGTGGCTAGCATGGTGGTCAAGTGTCCTCAGTTAGTAATACTGAGAGTGGAGCTCATGAAGAACAGTGTTTACTTCTTCAAGAGTGAGATGGGGAGGCCACTGAAGGAGCTTGTGGAGTTCCCTGAATACTTTACTTACAGTTTGGAATCCAGGGTCAAACCCAGGTACCAAAGGCTAAAAAGCAAGGGGATAAGGTGCTCTTTGAATTGGATGCTGAATTGTAGTGACCAGAGATTTGAAGAGAGGTTGCAGGGTAATTACATTGAAACTGAAAGCATAGGTCCATCGTTCTGTATGGGTGGGAAATTACAGCTGCCAGGGAATAATGCCATACTGTCAGATGCGGAAGAGGAGAGTGATGATGAAGTACTATACAGAAGAACTGTTTCTCTTTAG 1524 0.4442 MLARRKFLNLISTQFVSHQFNAVSKLTQLPSHPSSEIPKTLNSFRVLLLCSWNSTQASKFPEYEMPSVTWGVIQGRKEKLVSRVIVFDYLKGLGIIPDELQDLELPSTVEVMRERVEFLQKLGLTIDDINDYPLMLGCSVRKNMIPVLGYLEKIGIPRSKLGQFIKSYPQVLHASVIVELVPVVKFLRGLDVEREDIGYVLQKYPELLGFKLEGTMSTSVAYLVSIGVNPRDIGPMVTQYPYLLGMRVGTVIKPLIDYLISLGLPKKILARMLEKRAYLLGYDLDETVKPNVDCLISFGIRKECLPSVIAQYPQILGLPLKAKLSSQQYFFSLKLKIDPEGFARVVEKMPQVVSLHQNVIMKPVDFLLGRVIPPHDVASMVVKCPQLVILRVELMKNSVYFFKSEMGRPLKELVEFPEYFTYSLESRVKPRYQRLKSKGIRCSLNWMLNCSDQRFEERLQGNYIETESIGPSFCMGGKLQLPGNNAILSDAEEESDDEVLYRRTVSL* 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g3112 507 Pfam mTERF 148 456 IPR003690 GO:0003690|GO:0006355
Dod04g3112 507 Gene3D Transcription termination factor 3, mitochondrial 113 252 IPR038538 -
Dod04g3112 507 Gene3D Transcription termination factor 3, mitochondrial 253 466 IPR038538 -
Dod04g3112 507 SMART mt_12 162 193 IPR003690 GO:0003690|GO:0006355
Dod04g3112 507 SMART mt_12 378 409 IPR003690 GO:0003690|GO:0006355
Dod04g3112 507 SMART mt_12 198 229 IPR003690 GO:0003690|GO:0006355
Dod04g3112 507 SMART mt_12 410 441 IPR003690 GO:0003690|GO:0006355
Dod04g3112 507 SMART mt_12 126 157 IPR003690 GO:0003690|GO:0006355
Dod04g3112 507 SMART mt_12 343 373 IPR003690 GO:0003690|GO:0006355
Dod04g3112 507 SMART mt_12 270 301 IPR003690 GO:0003690|GO:0006355
Dod04g3112 507 SMART mt_12 306 338 IPR003690 GO:0003690|GO:0006355
Dod04g3112 507 SMART mt_12 234 265 IPR003690 GO:0003690|GO:0006355
Dod04g3112 507 PANTHER EXPRESSED PROTEIN 49 489 - -
Dod04g3112 507 PANTHER CGI-12 PROTEIN-RELATED 49 489 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g3112 Dod-Chr4 54798162 54799990 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Dod04g3112 mTERF 4.4e-107 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g3112 K15032 - gmx:100809590 840.106
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod04g3112 04 54798162 54799990 Dod02g3704 02 75782763 75784407 PCT