Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g3110 ATGGCTGAGCGCGGTGGCGGAGATCGTGGCGGCTTCGGCCGTGGTTTCAGCGGTCGTGGTCGCGGGGACAGGGGCCGCGGTGGCCGCCGCAGGGCCTCGGGCCGCCGCGAGGAGGAAGAGAAATGGGTTCCGGTGACTAAACTCGGTCGCCTTGTCAAGGAAGGTAAGATCGCAAGCCTCGAACACATCTACCTTCACTCTCTCCCAATCAAAGAGTACCAAATCATCGACACGTTGGTCGGCCCTTCACTAAAGGACGAGGTCATGAAGATCATGCCTGTTCAGAAACAGACACGTGCCGGTCAACGAACCCGATTCAAGGCCTTCGTCGTCGTCGGTGACGGTAACGGCCATGTTGGACTCGGCGTCAAGTGCAGCAAGGAGGTTGCCACCGCCATTCGCGGCGCCATTATCCTCGCGAAGCTCTCGGTGATTCCCGTGAGGAGAGGGTATTGGGGTAACAAGATCGGGAAGCCACACACCGTTCCTTGCAAGGTCACCGGAAAGTGCGGTTCCGTCACCGTTCGTATGGTGCCTGCACCTCGTGGTGCTGGAATTGTTGCTGCTAGGGTTCCCAAGAAGGTCTTGCAGTTCGCTGGGATTGAGGATGTGTTCACCTCTTCCAGAGGATCCACCAAGACTCTTGGGAATTTCGTCAAGGCTACATTCGAGTGTTTGTTGAAAACCTACGGTTTTCTGACCCCCGACTTCTGGAGGGAGACTCGCTTCCAGAAATCTCCATTCCAAGAGTACACTGATCTTCTGGCCAACGCCAAGCCAACAGCTAAGGCCATGATCTTGGAGGAAGAAAGGGTGGAGGCTTAA 825 0.5648 MAERGGGDRGGFGRGFSGRGRGDRGRGGRRRASGRREEEEKWVPVTKLGRLVKEGKIASLEHIYLHSLPIKEYQIIDTLVGPSLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIEDVFTSSRGSTKTLGNFVKATFECLLKTYGFLTPDFWRETRFQKSPFQEYTDLLANAKPTAKAMILEEERVEA* 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g3110 274 Pfam Ribosomal protein S5, N-terminal domain 84 148 IPR013810 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Dod04g3110 274 SUPERFAMILY dsRNA-binding domain-like 80 149 - -
Dod04g3110 274 PANTHER 40S RIBOSOMAL PROTEIN S2-1-RELATED 1 272 - -
Dod04g3110 274 Pfam Ribosomal protein S5, C-terminal domain 168 239 IPR005324 GO:0003735|GO:0005840|GO:0006412
Dod04g3110 274 PANTHER RIBOSOMAL S SUBUNIT 1 272 IPR000851 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Dod04g3110 274 TIGRFAM uS5_euk_arch: ribosomal protein uS5 37 244 IPR005711 GO:0003735|GO:0006412|GO:0015935
Dod04g3110 274 Gene3D - 41 146 - -
Dod04g3110 274 ProSitePatterns Ribosomal protein S5 signature. 101 133 IPR018192 -
Dod04g3110 274 MobiDBLite consensus disorder prediction 1 39 - -
Dod04g3110 274 Gene3D - 147 239 IPR014721 -
Dod04g3110 274 SUPERFAMILY Ribosomal protein S5 domain 2-like 160 240 IPR020568 -
Dod04g3110 274 ProSiteProfiles S5 double stranded RNA-binding domain profile. 84 147 IPR013810 GO:0003723|GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g3110 Dod-Chr4 54788570 54789935 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g3110 37 270 Cytoplasmic Ribosomal Protein Gene Family AT1G58380 85.470 7.82e-150 418
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g3110 K02981 - gmx:100797105 456.062