Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g3079 ATGAGAACCAAACGGCTTCATCTTCTCCTCTCCCTCCTCATCCTCGCAGCCACATTCTCCAATCTCCACCCCACCGCCTCCGCCACAGACGACGCCGAACAGAACCCTGGTCAGCTCGCCCGCGTCGCCATCGCAGTCAGCCTCTCAAAGGTCCACCGCGCCGCCGCCTACATCTCCAACCTCACGCGTGAAGCCGACTACGGCGGCGACACACGCGCCACCTCGGCGGTCCACGACTGCTTCACGAACCTGGACGACGCCGTCGACGAAATCCGTGGGTCGCTGAAGCAGATGCGGCAGATAGGAGCGGCCGGAGCGGGGTCGTTCATGTTCCAGATGAGCAACGTGCAGACGTGGATGAGCGCCGCCCTCACCGACGAGGAGACCTGTACGGACGGATTCCAGGACGTGCCGGACTGCCCGGTGAAGGCGGGCGTGTGCGGCCGCGTCGCCAAGGTGAAGAAGTTCACCAGCAACGCCTTGGCTCTCGTCAACACCTACGCCAACAAGGGAATGCCTTAG 522 0.636 MRTKRLHLLLSLLILAATFSNLHPTASATDDAEQNPGQLARVAIAVSLSKVHRAAAYISNLTREADYGGDTRATSAVHDCFTNLDDAVDEIRGSLKQMRQIGAAGAGSFMFQMSNVQTWMSAALTDEETCTDGFQDVPDCPVKAGVCGRVAKVKKFTSNALALVNTYANKGMP* 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g3079 173 CDD PMEI-like_3 19 169 - -
Dod04g3079 173 Gene3D Invertase/pectin methylesterase inhibitor family protein 17 167 IPR035513 -
Dod04g3079 173 SMART PMEI_2 9 163 IPR006501 GO:0004857
Dod04g3079 173 TIGRFAM PME_inhib: pectinesterase inhibitor domain 32 167 IPR006501 GO:0004857
Dod04g3079 173 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 32 167 IPR035513 -
Dod04g3079 173 PANTHER PECTINESTERASE INHIBITOR-LIKE 32 170 - -
Dod04g3079 173 PANTHER PLANT INVERTASE/PECTIN METHYLESTERASE INHIBITOR SUPERFAMILY PROTEIN 32 170 - -
Dod04g3079 173 Pfam Plant invertase/pectin methylesterase inhibitor 23 163 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g3079 Dod-Chr4 54525616 54526254 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g3079 72 163 Carbohydrate Esterase AT3G49220 35.870 1.99e-09 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g3079 - - gmx:100803842 256.144