Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g3077 ATGGACAAGCTCTTATTAAACTGTTGCATTGGTTACATTATTCTCCTTTATTCTCTCTTTGTACTTGTGCATGGCAAAGAACTATTATCATGCAACCAAACCCCATACCCGCATGTGTGCAAGCATTACATGACTACCAATACATTATCAACCCATGATGCTTCATCATCTTCCTTCCATGATATGGCCCTTAAGGTCACCATGGACCAAGCCATTAAAGCCCACAAACTAGTCTCAACCATGGAACTGAATAACTTCAAAGACAAACGTGCCAAGTTGGCATGGGAAGATTGTTTGGAGCTCTATGAGGACACAATCTATCAGGTGAACCGCTCATTGAGCTCAACCAATCTGAATGACAAATTAACCTGGCAAAGTGCATCCATTGCAAACCATCAAACATGTCAAAACGGTTTCAATGAATTCAACCTTCCCTCTCAACTAAACTACTTCCCATCAATGCTAAGCAACTTCTCCAAATTGCTTAGCAACTCCCTGTCCATTAGCAAGGCCATGGCTTTAACATCAGCATCAATATCATCAAAGACTAAACAAGTTGGTGGGAGAAGAAGGTTACTTTCAGATGGGTTCCCAGATTGGGTTTCGGCTTCAGATAGAAGAAGGCTTCTTCAGGAAACACCAAAGGTTGATATCGTGGTGGCAAAGGATGGGAGTGGGAGCTATAAGACCATCGCAGAGGGCGTGGCGGCGGCGGCTAAGATGGGTGGGAAGAGGAGAGTTGTTGTGCAGGTGAAAGCAGGTGTATACAAAGAGAATGTTGATATAAAGAAGACTGTGAAGAACATAATGATCGTTGGAGATGGGATCGATGCCACCATTGTTACCGGCAGCCGTAACGCACAAGACGGCTCCACCACTTTCCGTTCAGCTACTTTCGGGGTTTCCGGCGAAGGCTTCATAGCGCGGGACATAACCTTCGAGAACACGGCGGGGCCGCAGAATCACCAAGCGGTGGCTCTCCGCTCCGGCTCCGACCACTCCGTCTTCTACCGCTGCAGCTTCAAGGGCTACCAAGACACCCTATACGTCTACGCCCAGCGCCAATTCTACCGCGACTGCGACATCTACGGAACCGTAGACTTCATCTTCGGCGACGCCGTCTCCGTCCTCCAGAACTGCAACATCTACGTCAGAAGACCCATGAGCAACCAGCAGAACACCGTAACCGCCCAAGGAAGAACCGACCCCAACGAGAACACAGGCATTGTTATCCATAACTGCCACGTAACTGCTTCTGGGGACATGAGACCCGTGCAGGGTTCGTTCAAGACCTTTCTGGGTCGTCCATGGCAGAAGTACTCGAGGACTGTGGTGATGAAGAGCACCCTTGATGGGTTGATTCATCCACTGGGTTGGGCTCCATGGAGTGGGAGCTTTGCTCTGAGCACACTGTATTATGGTGAGTATATGAACACTGGAGCTGGTGCTAACACTGCAGGGAGGATTAAGTGGCCAGGGTTTCGTGTCATCAAGGACCCTTCTGAGGCTGTGAAGTTCTCTGTTGGTGATTTCCTTGCTGGTGACTCTTGGATTCCTGGTACCGGCGTGCCGTTTGATGCAGGTTTGTGA 1590 0.4899 MDKLLLNCCIGYIILLYSLFVLVHGKELLSCNQTPYPHVCKHYMTTNTLSTHDASSSSFHDMALKVTMDQAIKAHKLVSTMELNNFKDKRAKLAWEDCLELYEDTIYQVNRSLSSTNLNDKLTWQSASIANHQTCQNGFNEFNLPSQLNYFPSMLSNFSKLLSNSLSISKAMALTSASISSKTKQVGGRRRLLSDGFPDWVSASDRRRLLQETPKVDIVVAKDGSGSYKTIAEGVAAAAKMGGKRRVVVQVKAGVYKENVDIKKTVKNIMIVGDGIDATIVTGSRNAQDGSTTFRSATFGVSGEGFIARDITFENTAGPQNHQAVALRSGSDHSVFYRCSFKGYQDTLYVYAQRQFYRDCDIYGTVDFIFGDAVSVLQNCNIYVRRPMSNQQNTVTAQGRTDPNENTGIVIHNCHVTASGDMRPVQGSFKTFLGRPWQKYSRTVVMKSTLDGLIHPLGWAPWSGSFALSTLYYGEYMNTGAGANTAGRIKWPGFRVIKDPSEAVKFSVGDFLAGDSWIPGTGVPFDAGL* 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g3077 529 CDD PMEI-like_3 29 173 - -
Dod04g3077 529 Pfam Pectinesterase 217 515 IPR000070 GO:0030599|GO:0042545
Dod04g3077 529 SMART PMEI_2 23 168 IPR006501 GO:0004857
Dod04g3077 529 Gene3D - 212 529 IPR012334 -
Dod04g3077 529 Gene3D Invertase/pectin methylesterase inhibitor family protein 29 173 IPR035513 -
Dod04g3077 529 ProSitePatterns Pectinesterase signature 2. 362 371 IPR033131 -
Dod04g3077 529 SUPERFAMILY Pectin lyase-like 213 528 IPR011050 -
Dod04g3077 529 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 30 172 IPR035513 -
Dod04g3077 529 Pfam Plant invertase/pectin methylesterase inhibitor 30 168 IPR006501 GO:0004857
Dod04g3077 529 PANTHER PECTINESTERASE 20 528 - -
Dod04g3077 529 PANTHER PECTINESTERASE INHIBITOR 5-RELATED 20 528 - -
Dod04g3077 529 TIGRFAM PME_inhib: pectinesterase inhibitor domain 30 172 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g3077 Dod-Chr4 54506268 54509691 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g3077 3 529 Carbohydrate Esterase AT1G23200 53.249 0.0 560
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g3077 - - gmx:100816802 831.247