Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g3075 ATGATGGTTAGCTATTTCCCCTTCCTCACCGTCACATCCACCACGTTCATCATTGTTTTCCTCTTAACAACTTTGCCACAATCCTACTCTCAAAAAAATGATACATACTTCATTTGCAGCCAACAATTCATCAGTTGTGGAACACTCAAAAACTTATCCTATCCTTTCTGGGGAGGGAACCGACCCCAGTTTTGTGGTAGCGATGGCTTCAAGCTCACCTGCATGCACAACCAAAACACTTTAATTCAAGTTGGTTCACAAAAGTTCCATGTGCTAAGCATCAACCAAACGGCTAGCACCATGAGAGTTGTACGAACAGACCTTGTTTATGATCACTGCTCTTCTTCAAATTTTACCAACACTTCTCTTAGGGGCAGTCCTTTCCGCTTTCTCCCAACTGTTCAGAATGTCACTATATTCTACGATTGCCCTTCTGGGAATTCAATTGTTGGGAACAGTTTTACGTGCCAGAATGATAGCAGTAAACATGGTTTCTATGTGGTCAATAATGGAACTCAGCTTCAACAGTTTCAGAACTGCGGGGTTAGTGTTGAAGTGCAAGTTTCACGGGATGCTGTTGTTCGGGACTCTAGGAATGGAGCTGAATCCCTGAAGAAAGCGGTGGATCAAGGGTTCGATGTGAAGTATGATGCAGAGTGGTCTTTACACTGCACAGCATGCATGGAATCTGGAGGAGCATGTGGGACCAATAATAAGAATGGTTCGTCTCAGTTTTCATGTTATTGCCCCGGTGGAACTCACGACTCAGCCTGTCCTACCCACAAAAGTAGAACGAAGCACACAGTGTTGAAACTGGTTTTAGGTTTCGTAGCTACTGGACTTGGGCTACCTCTCATTGCTGTCACCATATGCAAAAATAAAGCTAAGATATGGAAGTTTATAAAATCCCAATTTGGCAAGATAAGGGATGATCGAAATATAGAAGCCTTCCTAGAAAGTCAAGGTCCTCTGGGTATAAAAAGATATAGCTTCTCTGATGTCAAGAAAATGACCGACTCCTTCAAAGTCAAACTGGGAGAAGGTGGTTATGGCTCTGTATACAGGGGAAAACTACCCAATGGTGGCTCTGTGGCTGTAAAGATACTGAATGAGTCACAAAGTAATGGAGAAGAATTTATCAATGAGGTTGCCAGCATTAGCAAAACTTCCCATGTTAATGTTGTCACTCTTCTTGGTTTTTGTCTAGAAGGAAGCAGAAAAGCTCTCATCTATGAGTTTATGTCCAATGGTTCCCTTGAAAAATTCATTCACAAGAAGAAGGCTGGAGCTGAAACGCCAACTCCATCCTTGAGTTGGGACAAGTTGTACCAGATTGCGGTAGGGATAGCTCGAGGACTTGAATACTTGCATAAAGGATGCAACACTCGAATTCTGCATTTCGATATCAAGCCTCATAATATCCTTTTGGATGAAAATTATCGCCCGAAGATTTCAGATTTTGGGCTTGCTAAGCTCAGCACAAGAGATGAGAGCATTGTTTCAATGTCAGATGCTAGAGGGACAGTTGGGTATCTAGCCCCAGAAATGTGTAACAAGAGTTTTGGAGGTGTTTCTTATAAATCAGATGTTTATAGCTATGGGATGATGTTGCTAGAAATGGTTGGAGGGCAGAAGAATGCGGACATTGAAGGTAGTCGCTCAAGTGAGATATATTTTCCACATTTGGTGATATATAAGAAGCTTGAGCTGGGCAGTGATTTGGGACTTATTGATGGGAACAATGAGATAGCAAAGAGAATGACCATGGTGGGTTTGTGGTGCATTCAGACAATCCCTTCTCATAGACCTACAACAAGTAAAGTGATTGACATGTTGGAAGGTAGCATGGAATCTCTGGAAATGCCACCAAAGCCTGTTATGTCTTCTCCTCCGAGATCAACAACAGAGTTTTCCACTGCATCACTTTCAATGGATAGTGATGGACTTGCAAGTGTCTAA 1959 0.4237 MMVSYFPFLTVTSTTFIIVFLLTTLPQSYSQKNDTYFICSQQFISCGTLKNLSYPFWGGNRPQFCGSDGFKLTCMHNQNTLIQVGSQKFHVLSINQTASTMRVVRTDLVYDHCSSSNFTNTSLRGSPFRFLPTVQNVTIFYDCPSGNSIVGNSFTCQNDSSKHGFYVVNNGTQLQQFQNCGVSVEVQVSRDAVVRDSRNGAESLKKAVDQGFDVKYDAEWSLHCTACMESGGACGTNNKNGSSQFSCYCPGGTHDSACPTHKSRTKHTVLKLVLGFVATGLGLPLIAVTICKNKAKIWKFIKSQFGKIRDDRNIEAFLESQGPLGIKRYSFSDVKKMTDSFKVKLGEGGYGSVYRGKLPNGGSVAVKILNESQSNGEEFINEVASISKTSHVNVVTLLGFCLEGSRKALIYEFMSNGSLEKFIHKKKAGAETPTPSLSWDKLYQIAVGIARGLEYLHKGCNTRILHFDIKPHNILLDENYRPKISDFGLAKLSTRDESIVSMSDARGTVGYLAPEMCNKSFGGVSYKSDVYSYGMMLLEMVGGQKNADIEGSRSSEIYFPHLVIYKKLELGSDLGLIDGNNEIAKRMTMVGLWCIQTIPSHRPTTSKVIDMLEGSMESLEMPPKPVMSSPPRSTTEFSTASLSMDSDGLASV* 653
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g3075 652 Gene3D Phosphorylase Kinase; domain 1 316 413 - -
Dod04g3075 652 SUPERFAMILY Protein kinase-like (PK-like) 319 613 IPR011009 -
Dod04g3075 652 ProSitePatterns Serine/Threonine protein kinases active-site signature. 464 476 IPR008271 GO:0004672|GO:0006468
Dod04g3075 652 CDD STKc_IRAK 345 614 - -
Dod04g3075 652 ProSitePatterns Protein kinases ATP-binding region signature. 345 367 IPR017441 GO:0005524
Dod04g3075 652 SMART serkin_6 339 612 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dod04g3075 652 ProSiteProfiles Protein kinase domain profile. 339 619 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dod04g3075 652 MobiDBLite consensus disorder prediction 619 652 - -
Dod04g3075 652 PANTHER RUST RESISTANCE KINASE LR10-RELATED 16 646 IPR045874 GO:0004672
Dod04g3075 652 MobiDBLite consensus disorder prediction 630 652 - -
Dod04g3075 652 PANTHER GLYCEROPHOSPHODIESTER PHOSPHODIESTERASE, PROTEIN KINASE RLK-PELLE-LRK10L-2 FAMILY-RELATED 16 646 - -
Dod04g3075 652 Pfam Protein kinase domain 342 609 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dod04g3075 652 Pfam Wall-associated receptor kinase C-terminal 158 251 IPR032872 -
Dod04g3075 652 Gene3D Transferase(Phosphotransferase) domain 1 414 623 - -
Dod04g3075 652 Pfam Wall-associated receptor kinase galacturonan-binding 39 105 IPR025287 GO:0030247
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g3075 Dod-Chr4 54468148 54472869 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g3075 13 641 Receptor kinase-like Gene Family AT5G38260 39.785 2.59e-143 429
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Dod04g3075 Pkinase 2.8e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g3075 - - gmx:100816285 974.156