Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g3070 ATGGCATTCGCCACCGGTAACCGCTCCGATATCAAGCCTCTCTCCGAGCGCTACCATTTCCTAAGCTCCATGTATAGGCACCACTCCAATGCCGAAGACGAGGTGATTTTTCCAGCTCTAGATATACGTGTCAAGAATGTAGCACAGACTTATTCTCTAGAACACAAGGGTGAAAGCAATCTTTTTGCTCATCTATTTGAGCTGTTAAATTCTTCCATCTGCAATGATGAAGGTTTCCCCAGAGAGTTAGCATCCTGCACAGGAGCTTTGCAGACGTCAGTTAGTCAACACATGGCCAAGGAAGAGAAGCAGGTATTTCCTCTGCTTATTGAGAAGTTCTCTCTTGAGGAACAGGCATCCTTAGTTTGGCAGTTTCTTTGCAGCATTCCCGTGAATATGATGGCAGAATTTCTTCCATGGCTTTCAACATCTATATCACCTGATGAATCTCAGGATTTATGGAATTGCTTAGTCAAGATAGTGCCAGAGGAAAAGCTTCTTCAAAAGGTTATTTTCACGTGGCTGGAAGGGAGTAGTAGTGTTAACACAGTTGAAAGCTGTATTGAACATTCTCAAGTTCAATGTAGTTCTAGCCCATTGTCCCGTCAGGTTGAGAAAGCATCCTGTGCTTGTGACTCCACAACTACTGGAAAAAGGAAATATTCTGGATCTACCCTGGATGTTTCTGATGCCACTGGAACACATCCTATAGATGAAATATTGCTCTGGCATAATGCAATAAAGAAAGAGCTAAGTGAGATAGCAGTGGAGACCAGAAAGATACAACACTCTGGAGATTTTACTAATCTATCAGCTTTTAATCAAAGATTGCAGTTTATTGCTGAAGTTTGTATATTTCACAGTATTGCTGAGGACAAGGTCATTTTTCCAGCAGTAGATGGAGAACTTTCTTTCTTACAGGAGCATGCTGAAGAAGAAACCCAATTTAATGACTTCCGGTGTTTGATTGAAGGTATTCAAAGTGAAGGAGCAACATCTAATTCTGAAGTTGAATTCTTTTCAAAGTTATGCTCACATGCTGATCATATAATGGAAACCATACGGAGGCATTTCCATAATGAAGAAGTTCAGGTTCTTCCACTTGCAAGAAAGCACTTTAGCTTTAAAAGGCAACGTGAACTTCTGTATCAAAGCTTATGCATGATGCCTCTGAAATTGATTGAGCAGGTCCTTCCATGGTTGGTAGGCTCATTAACTGCAGATGAAACAAAGATGTTTCTGAGAAACATGCAATTGGCAGCTCCAGCAATGGATTCTGCTCTAGTCACACTCTTCTGTGGGTGGGCTTGCAAGGCTCGTAATGAAGGTCTATGTCTGTCTTCCGGTGCATCAGGTTGTTGTCCTGTTCAAAGACTTTCTGATATAGAAGAAAACATTCTTTGGCCATCCTGTGCTTGTGCTTCTGCATCAGTTGGTAGAGATTGCTCCATGTCAGATGAATTAGATGGGAACAAAAGATCAGTCAAGCGAAACTTATTGGAGTCGCACAAGAATGGGAATATGACTGAAACTCCAGAGACTGACATCATCCAGAAACAATGTTGCAGTGTTCAATCTTGTTGTGTGCCAGGTTTAGGAGTAAACAGTAACACTTTGGGGCTGAGTTCTCTGTCTACAGCCAAGTCCTTTCGGTCCTTATCTTTCAGCTCTTCTGCCCCATCTCTCAATTCAAGTCTTTTCATGTGGGAAGCAGAGAACAGCTCATGTGATGTTGGTTCCGTACAAAGACCAATTGATACCATATTTAATTTCCACAAAGCTGTACGGAAAGACTTGGAGTATCTAGATGTTGAATCTGGAAAGCTGAGTGACGGTGATGAGACAGTTCTTCGGCAATTTAGTGGAAGGTTTCGTCTTTTGTGGGGTTTATATAGAGCTCATAGTAATGCAGAAGATGATATAGTATTTCCAGCATTGGAGTCCAAAGAGGCACTCCATAACGTGAGTCATTCGTACATGCTGGACCATAAGCAGGAAGAACAGTTATTTGAAGATATTTCCTGCGTTCTTTCTGAGCTTTCTGTCCTTCATGAAGCCTTGCAGATGAACCATAAGTCAGAGGATCTAAGTTATTTTGGAACTTCAGATGCCAAGGGCAGTGATAATATCAAAAAGTATAATGAACTCGCAACTAGGCTTCAAGGGATGTGCAAATCCATAAGAGTTACACTGGATCATCATATTTTCAGGGAAGAGTGTGAACTATGGCCACTGTTTGGGAAACATTTCACTGTGGAAGAACAAGACAAGATAGTGGGCCGGATAATTGGAACTACAGGTGCTGAAGTTCTCCAGTCAATGTTACCATGGGTAACCTCTGCACTTACTCAAGATGAACAGAACAAAATGATGGACACATGGAAGCAGGCAACTAAGAACACTATGTTCAATGAATGGCTTAATGAATGCTGGAAGGAGAGTCCAGCACATATAACAGAGACAGAAACATCAGATCATAGCACTTCTCAAAGAGGTGCTGAATATCAAGAAAGCTTGGACCTCAATGATCAAATGTTCAAGCCAGGTTGGAAAGACATATTCCGGATGAATCAGAATGAACTTGAGTCAGAGATCCGTAAGGTTTATCGTGACTCAACTCTTGATCCAAGGAGAAAGGCATATCTTGTGCAGAATCTAATGACGAGTCGTTGGATAGCTGCTCAGCAGAAATCACCTAAAGCCTTATCTGAAGAATCATCTAATGGTGAACAAATAGAAGGGCAATCACCATCATTTCGTGACCCAGGTAAACATGTATTTGGGTGTGAGCACTACAAGAGAAATTGCAAGCTTCGAGCTGCATGCTGTGGCAAGTTATTTACTTGCAGATTTTGTCATGACAATGTGAGCGATCACTCAATGGATAGAAAAGCAACATCAGAAATGATGTGCATGCGCTGCCTCAATATACAGCCGATAGGGCCTACATGCATGACACCTTCGTGTAATGGACTTTCAATGGCAAAGTACTATTGCAATATATGCAAATTTTTTGATGATGAAAGGAATGTATATCACTGCCCATATTGCAACTTATGCCGTGTTGGACGAGGGCTTGGAATTGATTACTTTCATTGCATGAATTGCAATTGTTGCCTGGGGATAAAATCAGCATCGCACAAGTGCCTGGAGAAAGGTTTAGAAATGAACTGCCCAATTTGCTGCGATGATTTATTCACGTCAAGTGCAATAGTCAGAGCTCTACCTTGTGGCCACTATATGCATTCTGCTTGCTTTCAGGCATACACTTGTAGTCACTACACATGTCCAATCTGCAGCAAGTCATTGGGAGATATGGCGGTTTACTTTGGTATGCTTGATGCGTTATTGGCTGCTGAGGAGCTTCCTGAGGAGTATATGGACCGTTGTCAGGACATCCTCTGCCATGACTGTGATAAAAAGGGCACTTCACGCTTCCATTGGTTATACCACAAATGTGGATTTTGTGGCTCTTACAATACCCGGGTGATTAAGTCTGGGGCATCAAATTCCAGCTGCTCTTAG 3525 0.4196 MAFATGNRSDIKPLSERYHFLSSMYRHHSNAEDEVIFPALDIRVKNVAQTYSLEHKGESNLFAHLFELLNSSICNDEGFPRELASCTGALQTSVSQHMAKEEKQVFPLLIEKFSLEEQASLVWQFLCSIPVNMMAEFLPWLSTSISPDESQDLWNCLVKIVPEEKLLQKVIFTWLEGSSSVNTVESCIEHSQVQCSSSPLSRQVEKASCACDSTTTGKRKYSGSTLDVSDATGTHPIDEILLWHNAIKKELSEIAVETRKIQHSGDFTNLSAFNQRLQFIAEVCIFHSIAEDKVIFPAVDGELSFLQEHAEEETQFNDFRCLIEGIQSEGATSNSEVEFFSKLCSHADHIMETIRRHFHNEEVQVLPLARKHFSFKRQRELLYQSLCMMPLKLIEQVLPWLVGSLTADETKMFLRNMQLAAPAMDSALVTLFCGWACKARNEGLCLSSGASGCCPVQRLSDIEENILWPSCACASASVGRDCSMSDELDGNKRSVKRNLLESHKNGNMTETPETDIIQKQCCSVQSCCVPGLGVNSNTLGLSSLSTAKSFRSLSFSSSAPSLNSSLFMWEAENSSCDVGSVQRPIDTIFNFHKAVRKDLEYLDVESGKLSDGDETVLRQFSGRFRLLWGLYRAHSNAEDDIVFPALESKEALHNVSHSYMLDHKQEEQLFEDISCVLSELSVLHEALQMNHKSEDLSYFGTSDAKGSDNIKKYNELATRLQGMCKSIRVTLDHHIFREECELWPLFGKHFTVEEQDKIVGRIIGTTGAEVLQSMLPWVTSALTQDEQNKMMDTWKQATKNTMFNEWLNECWKESPAHITETETSDHSTSQRGAEYQESLDLNDQMFKPGWKDIFRMNQNELESEIRKVYRDSTLDPRRKAYLVQNLMTSRWIAAQQKSPKALSEESSNGEQIEGQSPSFRDPGKHVFGCEHYKRNCKLRAACCGKLFTCRFCHDNVSDHSMDRKATSEMMCMRCLNIQPIGPTCMTPSCNGLSMAKYYCNICKFFDDERNVYHCPYCNLCRVGRGLGIDYFHCMNCNCCLGIKSASHKCLEKGLEMNCPICCDDLFTSSAIVRALPCGHYMHSACFQAYTCSHYTCPICSKSLGDMAVYFGMLDALLAAEELPEEYMDRCQDILCHDCDKKGTSRFHWLYHKCGFCGSYNTRVIKSGASNSSCS* 1175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g3070 1174 PANTHER CHY ZINC FINGER PROTEIN 1 1173 - -
Dod04g3070 1174 SMART ring_2 1058 1099 IPR001841 -
Dod04g3070 1174 CDD Hr-like 586 744 - -
Dod04g3070 1174 ProSiteProfiles Zinc finger CHY-type profile. 922 991 IPR008913 GO:0008270
Dod04g3070 1174 CDD RING-H2_Pirh2 1057 1100 - -
Dod04g3070 1174 Pfam CHY zinc finger 929 1004 IPR008913 GO:0008270
Dod04g3070 1174 SUPERFAMILY Zinc hairpin stack 995 1051 IPR037275 -
Dod04g3070 1174 MobiDBLite consensus disorder prediction 897 919 - -
Dod04g3070 1174 Pfam Ring finger domain 1057 1099 IPR001841 -
Dod04g3070 1174 SUPERFAMILY RING/U-box 1056 1103 - -
Dod04g3070 1174 CDD Hr-like 238 367 - -
Dod04g3070 1174 Gene3D - 1129 1169 - -
Dod04g3070 1174 CDD Hr-like 2 107 - -
Dod04g3070 1174 Pfam Zinc-ribbon 1105 1162 IPR039512 -
Dod04g3070 1174 ProSiteProfiles Zinc finger CTCHY-type profile. 994 1057 IPR017921 -
Dod04g3070 1174 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 1 1173 - -
Dod04g3070 1174 SUPERFAMILY CHY zinc finger-like 924 985 IPR037274 GO:0008270
Dod04g3070 1174 Pfam Hemerythrin HHE cation binding domain 584 745 IPR012312 -
Dod04g3070 1174 Pfam Hemerythrin HHE cation binding domain 235 369 IPR012312 -
Dod04g3070 1174 Pfam Hemerythrin HHE cation binding domain 8 109 IPR012312 -
Dod04g3070 1174 ProSiteProfiles Zinc finger RING-type profile. 1058 1100 IPR001841 -
Dod04g3070 1174 MobiDBLite consensus disorder prediction 897 915 - -
Dod04g3070 1174 Gene3D nmb1532 protein domain like 580 821 - -
Dod04g3070 1174 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1054 1102 IPR013083 -
Dod04g3070 1174 Gene3D nmb1532 protein domain like 238 385 - -
Dod04g3070 1174 Gene3D nmb1532 protein domain like 1 127 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g3070 Dod-Chr4 54405148 54415875 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g3070 573 796 C2H2 Transcription Factor Family AT3G18290 27.679 7.15e-20 94.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g3070 K16276 - gmx:100801725 2119.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod04g3070 04 54405148 54415875 Dod02g3658 02 74855696 74868818 PCT