Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g3062 ATGTCTACTTCAAAGAGCGCCAGCAGTTCTAGTGAAGATGACAATGAGCTTAGAAGAGGGCCTTGGACTCTTGAAGAGGATAATCTGCTCTCTCAATACATTGCTGATCAAGGGGAAGGGCGATGGAATCTTCTGGCTAATCGTTCAGGATTAAAGAGAACAGGAAAAAGTTGCAGATTGAGGTGGCTAAATTATCTAAAGCCAGATGTTAAGCGAGGAAATTTAACACCAGAAGAGCAGCTTTTAATTCTTCAACTCCACTCACAGTGGGGAAACAGGTGGTCAAAAATTGCACAGCATTTGCCGGGTAGGACAGACAATGAAATCAAGAACTATTGGAGGACTCGGATTCAGAAACAAGCAAGGCATTTGAAGATTGAGACAGATAGCAGAAGTTCCAAGAACTTGTGA 411 0.4258 MSTSKSASSSSEDDNELRRGPWTLEEDNLLSQYIADQGEGRWNLLANRSGLKRTGKSCRLRWLNYLKPDVKRGNLTPEEQLLILQLHSQWGNRWSKIAQHLPGRTDNEIKNYWRTRIQKQARHLKIETDSRSSKNL* 137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g3062 136 Pfam Myb-like DNA-binding domain 19 66 IPR001005 -
Dod04g3062 136 Pfam Myb-like DNA-binding domain 72 115 IPR001005 -
Dod04g3062 136 ProSiteProfiles Myb-like domain profile. 14 66 IPR001005 -
Dod04g3062 136 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 5 133 IPR044676 GO:0003700|GO:0006355|GO:0043565
Dod04g3062 136 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 67 121 IPR017930 -
Dod04g3062 136 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 14 66 IPR017930 -
Dod04g3062 136 Gene3D - 75 118 - -
Dod04g3062 136 SUPERFAMILY Homeodomain-like 17 113 IPR009057 -
Dod04g3062 136 CDD SANT 76 115 IPR001005 -
Dod04g3062 136 MobiDBLite consensus disorder prediction 1 22 - -
Dod04g3062 136 PANTHER OS01G0128000 PROTEIN 5 133 - -
Dod04g3062 136 SMART sant 71 119 IPR001005 -
Dod04g3062 136 SMART sant 18 68 IPR001005 -
Dod04g3062 136 Gene3D - 19 71 - -
Dod04g3062 136 CDD SANT 21 66 IPR001005 -
Dod04g3062 136 ProSiteProfiles Myb-like domain profile. 67 117 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g3062 Dod-Chr4 54373627 54374267 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g3062 14 130 MYB Transcription Factor Family AT1G68320 80.342 3.12e-68 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Dod04g3062 Myb_DNA-binding 1.4e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g3062 K09422 - gmx:778045 249.21