Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g3061 ATGCAGAACTTGATCCCTTTCACCAGTGACAGCTTCATGGGCTCTCCAGAACCCGAAATTTCAGGAAACTTTGACCAAAATTTTTCAGGCCTTGTCCATTATGTTAATCACTGTGCTGTTCCAGTATCACCTCCCATTTCTTCAGCAGAAAATGAAATCCAAGAAAGCAAAAAAAGGAAAGTGACAGATATGCCAGAGGCCATGTCAGCAAACTCAACCCCTGCAGCTTCTGAGAGTGGGAGCAAAACAAAGAATGAAGACCAGAAACCAATGGAAGTAGTTCATGTTAGAGCTAGAAGAGGTCAAGCTACTGATAGTCACAGTTTGGCAGAAAGGGTTAGAAGAGGGAAAATCAATGAAAAACTTAAGTGCTTGCAGAACATTGTCCCAGGGTGTTACAAGACCATGGGTATGGCAATAATGTTGGACGAAATCATAAACTATGTCCAATCCTTGCAGCATCAAGTGGAGTTCCTCTCCATGAAGCTGACTGCAGCAAGTGCCTTTTATGACTTCAATTCAGAGACAGATGCTTTAGAAACAATGCAGAGAGTAAGGGCATCCGAGGCAAAAGAGTTGGCCAAGTGTGAGAGAGGAGGATATGGAGGAGATTTTTGCTCCCAACCAACCTGGCCTTGGTCTCTTTGA 648 0.4367 MQNLIPFTSDSFMGSPEPEISGNFDQNFSGLVHYVNHCAVPVSPPISSAENEIQESKKRKVTDMPEAMSANSTPAASESGSKTKNEDQKPMEVVHVRARRGQATDSHSLAERVRRGKINEKLKCLQNIVPGCYKTMGMAIMLDEIINYVQSLQHQVEFLSMKLTAASAFYDFNSETDALETMQRVRASEAKELAKCERGGYGGDFCSQPTWPWSL* 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g3061 215 Gene3D - 102 164 IPR036638 GO:0046983
Dod04g3061 215 MobiDBLite consensus disorder prediction 66 81 - -
Dod04g3061 215 CDD bHLH_AtBPE_like 92 177 - -
Dod04g3061 215 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 2 211 IPR024097 GO:0006355
Dod04g3061 215 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 102 152 IPR011598 GO:0046983
Dod04g3061 215 MobiDBLite consensus disorder prediction 45 91 - -
Dod04g3061 215 SMART finulus 108 158 IPR011598 GO:0046983
Dod04g3061 215 PANTHER TRANSCRIPTION FACTOR BEE 1 2 211 - -
Dod04g3061 215 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 100 170 IPR036638 GO:0046983
Dod04g3061 215 Pfam Helix-loop-helix DNA-binding domain 106 153 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g3061 Dod-Chr4 54355804 54357212 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g3061 46 188 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G18400 62.658 2.13e-58 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Dod04g3061 HLH 6.5e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g3061 - - aprc:113855800 320.087