Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g3054 ATGGCGGAGCAACACCTACCTCCAGGGTTCAGGTTCCATCCTACGGACGAAGAGCTCATCACATATTATCTACTGAGAAAGGTGTCTGATAGCAGCTTCACCTCCAAAGCTGTAGCAGTTGTTGACCTCAATAAATCTGAGCCTTGGGACCTCCCAGGTAAGGCCTCCATGGGTGAGAAAGAATGGTATTTCTTCAGCTTGAAAGACCGAAAGTATCCAACTGGACTTCGAACGAATCGAGCCACTGAATCAGGCTATTGGAAAACCACTGGAAAAGACAAAGAAATTTATGGTGCCGGGGTTTTGATAGGAATGAAGAAGACCTTGGTTTTTTATAAGGGAAGAGCTCCGAGGGGTGAGAAAAGTAACTGGGTTATGCATGAATATAGGCTTGAAAACAAGCATCCCTTTAAATCTTCAAAGGAAGAATGGGTGGTTTGTAGGGTCTTCAAAAAGAGCTCAGCACCCAAAAAATCACAGCAGATATCATCCCCTCAACCATCTCAAGATTCCCCTTGCAATACAACCTCAATGGTCAACGAATTTATTGGTGATGCCGAACTCCCAAATATAAATAGCATAGCAAATTCATCATCAGGTGGCTTCGCTTACCTTGCAGGACAATCTTACAGTGTCGGTGATCCAAGCAATATGAATTGGCCAGCTGCAAGTGAGGTTCCGTCTCTCCCATGGCCTTCTGGATTGCTGATGAATCCAATCAATTCTTTGCTTCTCAAGGCATTGCAACTCAGGAGTTATCAACAAAGAGAAGCTGTAGTAGCTAGTGCTAATCATTTTGCAACATATAATACTGTTATTCCTCAAGAATTTTCTCATCTTGGAACTGATGACTTGGGCTCGAATCTCAGTGTTTCTGCTTCATCAAGAGTATTAGAGTGCTTGTCGCAGCAGCAGCAGCAGGAGCAGCCATTCAATATGGCTCCATTTGGGAGCTGA 957 0.4399 MAEQHLPPGFRFHPTDEELITYYLLRKVSDSSFTSKAVAVVDLNKSEPWDLPGKASMGEKEWYFFSLKDRKYPTGLRTNRATESGYWKTTGKDKEIYGAGVLIGMKKTLVFYKGRAPRGEKSNWVMHEYRLENKHPFKSSKEEWVVCRVFKKSSAPKKSQQISSPQPSQDSPCNTTSMVNEFIGDAELPNINSIANSSSGGFAYLAGQSYSVGDPSNMNWPAASEVPSLPWPSGLLMNPINSLLLKALQLRSYQQREAVVASANHFATYNTVIPQEFSHLGTDDLGSNLSVSASSRVLECLSQQQQQEQPFNMAPFGS* 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g3054 318 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 4 254 - -
Dod04g3054 318 Gene3D NAC domain 15 156 IPR036093 GO:0003677|GO:0006355
Dod04g3054 318 ProSiteProfiles NAC domain profile. 6 152 IPR003441 GO:0003677|GO:0006355
Dod04g3054 318 SUPERFAMILY NAC domain 3 152 IPR036093 GO:0003677|GO:0006355
Dod04g3054 318 Pfam No apical meristem (NAM) protein 7 131 IPR003441 GO:0003677|GO:0006355
Dod04g3054 318 PANTHER BNACNNG63190D PROTEIN 4 254 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g3054 Dod-Chr4 54326074 54329432 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g3054 3 313 NAC Transcription Factor Family AT3G18400 57.143 5.26e-110 320
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Dod04g3054 NAM 3.3e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g3054 - - gmx:100787111 408.683
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod04g3054 04 54326074 54329432 Dod02g3644 02 74662434 74665418 PCT