Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g3049 ATGCGGTTAAGCTGCAACGGATGCCGAGTGCTGCGAAAAGGATGCAGCAGCGACTGCCCAATCAGACCGTGCCTGCGGTGGATCAAATCCCCGCAATCGCAGGAGTACGCCACCCTCTTCTTGGCCAAGTTCTACGGCCGCGCCGGCCTCATCAACCTCATCAGTGCCGCCGCCCCACATCTCCGACCAGCGAGTTTTAAGTCGTTGCTGGAGGAAGCATGTGGGAGGATCGTGAACCCGACATACGGGTGCAGCGGGTTGCTATCATCGGGTAGGTGGGACCTGTGCGAAGCCGCCGTGGAAGCCGTTCTGAGTGGAGCGCCGATCATTACGCAGCTGGTGTCATCGTCTCCGTCGTCGGAACCTATGCTGAAGGCGTGCGATATTCGACACGTGTCCAGCAAAGGAAAGGGGTCGTCGAGTCTCCTCCACAAGGTGAAGAAGTCCCCAAGCAACCAGTTCAAGCGCAGCCGGGGAAGGGGAAAGAACAAGCAGCTTGCTGCAGGAGTTGAGTTAGAGTTGGAGGGATGCATTAGTACTGAGGAATGGGGTTCAGGTTCGGGTTCGGGTTCGGGATCGGGATCGGGATCGGGGGTGAGTCATGAGCATAAAAGTTTTCGTAATGGTAATGGAGGGGAAGCTGATTGCTGTTCCGTTGAGACCGTGGAGGTTGATGATGATGATGATCATCATCGTGCAGAGTTGGACCTCAACTTGACTCTGGGCTGGGGTCCCTACAACCCCAAGCCTACCCTGGATAGTGCTCACGCTTCACCTTCGTTTTTCAGATTTCTAAATTAG 801 0.5581 MRLSCNGCRVLRKGCSSDCPIRPCLRWIKSPQSQEYATLFLAKFYGRAGLINLISAAAPHLRPASFKSLLEEACGRIVNPTYGCSGLLSSGRWDLCEAAVEAVLSGAPIITQLVSSSPSSEPMLKACDIRHVSSKGKGSSSLLHKVKKSPSNQFKRSRGRGKNKQLAAGVELELEGCISTEEWGSGSGSGSGSGSGSGVSHEHKSFRNGNGGEADCCSVETVEVDDDDDHHRAELDLNLTLGWGPYNPKPTLDSAHASPSFFRFLN* 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g3049 266 MobiDBLite consensus disorder prediction 181 212 - -
Dod04g3049 266 ProSiteProfiles LOB domain profile. 3 109 IPR004883 -
Dod04g3049 266 MobiDBLite consensus disorder prediction 134 166 - -
Dod04g3049 266 PANTHER LOB DOMAIN-CONTAINING PROTEIN 41-LIKE 1 247 - -
Dod04g3049 266 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 247 - -
Dod04g3049 266 MobiDBLite consensus disorder prediction 134 148 - -
Dod04g3049 266 MobiDBLite consensus disorder prediction 182 204 - -
Dod04g3049 266 Pfam Lateral organ boundaries (LOB) domain 4 103 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g3049 Dod-Chr4 54293693 54294918 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g3049 1 176 AS2 family AT3G02550 52.542 3.42e-58 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Dod04g3049 LOB 1.5e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g3049 - - ahf:112802215 215.698