Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g3048 ATGAAAGCTGCAGGTGCCTTGGGTGCCAAGACAGCACGAGCTTGTGATAGCTGCCTACGCAGAAGAGCACGATGGTTTTGTGCAGCTGATGATGCTTTCCTCTGCCATGGCTGCGACAACTTGGTTCACTCTGCAAACCAGTTAGCCAGCAGGCACGAAAGGGTTAGGCTTCAAACTGCTTCATGCAAGCTCAGCTGCTCCAATAAGGTAACAGCACACGCGTGGCACAGTGGATTCACGCGCAAGGCAAGAACCCCACGTCACAACAAGCACTTGGCCTTGCAACAAAGGCTCAAAGACAAAGTGCTCTTCAACAACAGTTGTGTTCTTCCCGTTGTGCCTGAGATAGGGGTTGAAGAGCCGTTGCTCGATGTTGATGAGATCAGTGAGGAGCAACTTCTATGCCGCGTGCCTGTGTTTGACCCTTTTGACGCTGAGCTTTGCAACATGTACAGTGAAATGCTTGTGACTTGGACAACTTCTCTGAGTTTCTCCCATTCAGACATGGACTTCGCTGAGTTTGCTGCTGATGTTGAGAGCCTGCTTGGAAGTGGGCTTGATGAAGATGGTGAAGTGAAAGGATCAGAAGCAGTGTTTGATTGTAAAGAAGGTGTAAGAGATGCATGTGTGGAAGAGGGATCAGCCAAGAGTGCAATGGTAAAGGTTAAAGATGAAGAACTTGATGCTGATACAGCTTGTCATTTGGAGCACTCTGCTCTTGACATGACAAGCGATGCCTTTGATTGGAACATTGAGTCAGTGCTGTCACCGGAAGCAGCTTCACATGAAGAGGAGGAAAAGACGGCGGCGCCTGCAGCGGTGGCGAGTACTAGTAGTCGAGTTGGTGAAGTAAGAACAAAGAGAGACATATTTTTGAGACTAAACTATGAAGATGTTATAACGGCTTGGGCCAGCCAAGGTTGTCCATGGACAACAGGAAACCCTCCTAACTTCAACTCTGATGGTGACTGCTGGCCAAACTGCTTGGATGCAGATGTTCATTGCTCTTCTTATGGGGGAGTGAGAAGCTTAAGAGGGCACCTAGTACGGAGTGGAGATGGGGGAAGAGAAGCAAGAGTATCGAGGTATAGAGAAAAGAGAAGAACTCGTTTGTTTGCAAAGAAGATAAGATATGAAGTGAGGAAATTGAATGCAGAGAAGAGACCTAGAATGAAAGGTCGTTTTGTGAAGAGGGCATGCTTTGTTGGAGCCAATGCTTTTCCAGCCTACCACTGA 1236 0.479 MKAAGALGAKTARACDSCLRRRARWFCAADDAFLCHGCDNLVHSANQLASRHERVRLQTASCKLSCSNKVTAHAWHSGFTRKARTPRHNKHLALQQRLKDKVLFNNSCVLPVVPEIGVEEPLLDVDEISEEQLLCRVPVFDPFDAELCNMYSEMLVTWTTSLSFSHSDMDFAEFAADVESLLGSGLDEDGEVKGSEAVFDCKEGVRDACVEEGSAKSAMVKVKDEELDADTACHLEHSALDMTSDAFDWNIESVLSPEAASHEEEEKTAAPAAVASTSSRVGEVRTKRDIFLRLNYEDVITAWASQGCPWTTGNPPNFNSDGDCWPNCLDADVHCSSYGGVRSLRGHLVRSGDGGREARVSRYREKRRTRLFAKKIRYEVRKLNAEKRPRMKGRFVKRACFVGANAFPAYH* 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g3048 411 CDD Bbox1_BBX-like 14 57 - -
Dod04g3048 411 Pfam B-box zinc finger 12 55 IPR000315 GO:0008270
Dod04g3048 411 PANTHER CCT MOTIF FAMILY PROTEIN, EXPRESSED 2 404 - -
Dod04g3048 411 SMART bboxneu5 10 57 IPR000315 GO:0008270
Dod04g3048 411 MobiDBLite consensus disorder prediction 258 277 - -
Dod04g3048 411 ProSiteProfiles CCT domain profile. 356 398 IPR010402 GO:0005515
Dod04g3048 411 ProSiteProfiles Zinc finger B-box type profile. 10 57 IPR000315 GO:0008270
Dod04g3048 411 Pfam CCT motif 356 398 IPR010402 GO:0005515
Dod04g3048 411 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 6 2 404 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g3048 Dod-Chr4 54286406 54287846 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g3048 4 398 C2C2-CO-like Transcription Factor Family AT1G25440 43.823 3.59e-90 277
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Dod04g3048 zf-B_box 4.8e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g3048 - - adu:107478728 513.842
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod04g3048 04 54286406 54287846 Dod02g3639 02 74562869 74565260 PCT