Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g3025 ATGGATCTAGAAGAGAAATTCCTTGCTAAAGTTTCCGGTGTTCAAAGCCTGTCTTCCAGTGTGCAAAGTACTCCGGAAAAACATGGCCACTCTGATGATGCTTCAAGAAGTTCAGAACTCCTTCAGGAGTTTCTGAAATCTGGTCCAAAGAAGGAACTTCTTCGAACGTGCTTTGATAAGGACAAAAAGAACGCTTCATCGAAAAGCAGGATGACTGAAACTAAGTCAACTGGTAAGATGATTAAAAAACAAGACTCAAAAAAAGCTTCTAGCCTCAGCAATACATCCTCCCGGAAGCAACATCGGAAGGCTGAAAACCCCACACGACTCTTGCCTACCTCTGACCAGTCTTCTGAATTTGGACATTCAAACTCCTGGATCTGCAAAAATGCTGCGTGCAGGGCAGTTCTATGTATAGATGACACTTTTTGTAGAAGGTGTTCTTGTTGCATTTGTCACCTTTTTGATGATAACAAGGATCCTAGTCTTTGGTTGGTATGCTCATCTGAATCTACTCAAGGGGACTCCTGTGGGTTGTCTTGCCATATGGAGTGTGCCCTTCAACGTGAAAAAGTAGGAGTTATCGATCATGGGCAACTGATGCAACTAGATGGTAGTTATTGTTGTGCATCATGTGGTAAAGTTACTGGGATACTTGGATGCTGGAAAAAGCAGCTGAGTATAGCAAAAGATGCCCGGCGTGTAGATGTACTCTGTTATAGGATATATTTGAGCTACAGGCTCCTGGACGGGACTTCGAAATTCACAGAGTTGCATCAAATGGTACAAGAGGCGAAGGCTAAACTGGAGACAGAAGTTGGTCCAGTTAATGGGGTGTCTGCCAAGATGGCACGTGGCATTGTCAGCAGACTCCCTATAGCCAGTGATGTGCAGAAACTCTGCTCTCTTGCTATTGAGAAAGCTGATGGCTTGCTGGCTACTGTTTCCAATGTGAATCCAGATTCCAGAGAGGGTTCACTTCCTGCCGCTTGCAAGTTTGTTTTTGAAGAGGTAACAACTTCCTCTGTCCAAATCATTTTACTTGAATTATCAGATGTGTCATCTGAGGACATTAAGGGATACAAGCTCTGGTATTACAAGAGCAGGGAGGAATCACACACAAAAGATCCTGTTTCTGTGTTTCCGAAATCTCAGAGGAGGATTTTGATATCCAACCTTCAGCCTTGTACAGAATATACTTTTCGGATTGTATCTTATACTGATACGAGTGACCTGGGTCATTCCGAGGCTAAGTGTTTCACTAAGAGCATTGAGATAATTCAAAACCATCCTCCTTCTGGTGCTACGATGCATAAGAAAGAGAATCTTCAAACTGGGGGTAGCCCTTCTGGCTCCAAGATTGAGCCCAATCGCACAATAGAAGACTCTGGATTTAAGGTTCGAGACCTTGGAAGAATTTTGCGTCTTGCTTGGGCTCAAGAACAAGGTTATTTTGAGGATTTTTGCTGTGCTGATATGAAACATTGCTGTGGACAAAGTGAAATGGTCAAGCCTAGAATTCCAGAAGAGCAGCTGCCTTCAGTTTCACGAGGCCTTGATTTAAATGTTGTTTCAGTGCCGGATTTAAATGAAGAGCTAACACCTCCTTTTGAGTCTTCCAGGGATGAAGATAATGGTTGCACTTTAATGCAGGCTGTTGAAGCAGATGATGATGCTGCCTCCCATGGTCTGGAGAAAAATGGTTTAGCAAGATCACATGGGAGTGGTGATTCCCAAACCTGGACCCGTGGGACAACAAGAGAAGTGCCAGCTGTTGACTCTTGCATGGATGTTTGTAGGAAAAGGATAGCAAGCACGAATGAAGAGACACATGATTGTGACAGCACTTTGATAAATGGTTCTCCCATACGCATATCTGACGGTTCATGTTCCCTGGATGAGAACTTTGAGTATTGTGTGAAAGTAATACGGTGGCTAGAATGTGAGGGCCACATTAAACAGGAATTTAGGTTGAAATTGCTAACATGGTTTAGTCTGAGGTCGACAGAGCAAGAGCGCAGGGTGGTAAATACCTTCATTCAAACTCTCATCGATGACCCAAGTAGTTTGGCAGGGCAACTGGTTGACTCTTTTTCTGACATAATATCCAACAAGAGGCCGAGAAATGGATTCTGTGGTAAAGCGGTGGCATCAATTTAA 2160 0.4356 MDLEEKFLAKVSGVQSLSSSVQSTPEKHGHSDDASRSSELLQEFLKSGPKKELLRTCFDKDKKNASSKSRMTETKSTGKMIKKQDSKKASSLSNTSSRKQHRKAENPTRLLPTSDQSSEFGHSNSWICKNAACRAVLCIDDTFCRRCSCCICHLFDDNKDPSLWLVCSSESTQGDSCGLSCHMECALQREKVGVIDHGQLMQLDGSYCCASCGKVTGILGCWKKQLSIAKDARRVDVLCYRIYLSYRLLDGTSKFTELHQMVQEAKAKLETEVGPVNGVSAKMARGIVSRLPIASDVQKLCSLAIEKADGLLATVSNVNPDSREGSLPAACKFVFEEVTTSSVQIILLELSDVSSEDIKGYKLWYYKSREESHTKDPVSVFPKSQRRILISNLQPCTEYTFRIVSYTDTSDLGHSEAKCFTKSIEIIQNHPPSGATMHKKENLQTGGSPSGSKIEPNRTIEDSGFKVRDLGRILRLAWAQEQGYFEDFCCADMKHCCGQSEMVKPRIPEEQLPSVSRGLDLNVVSVPDLNEELTPPFESSRDEDNGCTLMQAVEADDDAASHGLEKNGLARSHGSGDSQTWTRGTTREVPAVDSCMDVCRKRIASTNEETHDCDSTLINGSPIRISDGSCSLDENFEYCVKVIRWLECEGHIKQEFRLKLLTWFSLRSTEQERRVVNTFIQTLIDDPSSLAGQLVDSFSDIISNKRPRNGFCGKAVASI* 720
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g3025 719 MobiDBLite consensus disorder prediction 57 118 - -
Dod04g3025 719 MobiDBLite consensus disorder prediction 57 86 - -
Dod04g3025 719 MobiDBLite consensus disorder prediction 11 42 - -
Dod04g3025 719 Pfam Fibronectin type III domain 332 410 IPR003961 GO:0005515
Dod04g3025 719 Pfam PHD - plant homeodomain finger protein 128 246 IPR032881 -
Dod04g3025 719 ProSiteProfiles Fibronectin type-III domain profile. 327 426 IPR003961 GO:0005515
Dod04g3025 719 PANTHER VIN3-LIKE PROTEIN 2-RELATED 55 715 IPR044514 GO:0010048|GO:0040029
Dod04g3025 719 MobiDBLite consensus disorder prediction 438 457 - -
Dod04g3025 719 Gene3D Immunoglobulins 312 417 IPR013783 -
Dod04g3025 719 MobiDBLite consensus disorder prediction 26 42 - -
Dod04g3025 719 MobiDBLite consensus disorder prediction 432 458 - -
Dod04g3025 719 SUPERFAMILY Fibronectin type III 333 409 IPR036116 GO:0005515
Dod04g3025 719 CDD FN3 332 408 IPR003961 GO:0005515
Dod04g3025 719 CDD PHD_VIN3_plant 148 212 - -
Dod04g3025 719 MobiDBLite consensus disorder prediction 565 585 - -
Dod04g3025 719 PANTHER VIN3-LIKE PROTEIN 1 55 715 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g3025 Dod-Chr4 54052167 54059111 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g3025 125 710 PHD Gene Family AT3G24440 50.584 0.0 543
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g3025 - - gmx:100780157 1218.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod04g3025 04 54052167 54059111 Dod04g3025 04 54052167 54059111 ECH
Dod04g3025 04 54052167 54059111 Dod02g3611 02 74019449 74028387 PCT