Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g3021 ATGGCAAGTCGAGTTAAGGAAGATGAGAAAAATGAACGAATAATTCGAGGTCTTCTCAAACTTACACCGAATCGAAGATGTATCAATTGCAACAGCTTGGGACCACAATATGTGTGCACAAATTTCTGGACGTTTGTGTGCACAAACTGTAGTGGAATACACCGGGAATTTACACATAGAGTAAAATCAGTTTCAATGGCTAAATTTACTTCGCAAGAAGTTAATGCACTTCAGGAAGGAGGAAATCAGCGTGCAAGAGAAATCTACTTTAAAGAATGGGATCCACAACGTCATTCCTTCCCTGATAGCAGTAATATAGACAGGCTCCGTGACTTTATTAAGCATGTTTACGTGGATAGAAGATTCACTGGTGAGAGGACATCTGACAAACCTCCAAGGGTAAAGATGGGTGACAAGGATGATTACTTTGAAAACAGGAGGATGGACACGTATCAAGGAGGAACTAAAAGCCCTCCATATGAGGACACATATGAACGTCATTATAGTGACAGATCTAGTCCTGGTGGAAGAAGTCCAGGATATGATCAAGAACGTAGGCAATATGTTGATTACAAGAGAAGCCCTGGTCGTCCTCCGATAATCAATGATTGGCGTCGTGAAGATAGATTTGGAGATGGGAAGAAATTTGAAGATCGTAGAATACCTGATGGAAAGAATAGAGTGGAAAGCCAATCTCCTGACCCAGCCAAAGATCTGGATTCTTCAGGCTCACCTGTGGTCCGGCCTGTAAGAGATATTTTGGGAGAAAATGTATTACCTCTTCGGATCATTGAACCCCCCAAAACAAACAGTGGAAGGGCCACTGATGGCTCAGCACTCACACAGAGAACTGCATCTTCCAATGGCTTGGCATCAAGCAATGGAACCTCGGTAGAAGTTAAGCTTGAGACTACTAAGAGTCTTATTGATTTTGATGATGATCCTGAACCAACTGTTTTGCCAGCAGTTCCTCAAGCCCAGCAAACTACTGTGACTCAGCCTGTTGTTGTACCAGCAAATTCCATTGATAACAATTGGGCGTCTTTTGATGTTGCTCCTGAGGCAAAAGCAGCTCAGGGTCCTTCAAATGTAAATCCACTTGAATCTGTGCTGTCACAATTGTCAGTACCAGCATCTTTACCTGCTCATGTTTCTGCAGCCCAAGGGCCTGCAACTGGATCAGCTCTTACTGCTAGTGCTGCTGGAGCTTCGACTGTTAATAGCTTCTCAACATTCACATCCAATGTTGCTTCAGTAACATCATCTGTATTATCAACTGCATCATCGCTCAATAATCCAGGACAGTGGGCTCGTTTGCAGTATCAGCAACCTTTTGTTCTTGCTACTGTTAGTCAGCCTACCACTCAACAAGTTACACTACCCGTAGGTGGATCTTCGAACAATCAGCTTTGGAATACAACTTCTGTGCCCACAGACACAGGGCACCCAAGTACACCATTGCCACATTCATCTCATCAGGAAGCAAAACCTGCCAACGAGGCTAAATCCAGTGTTGATTCACAAACTCCTACCACCAGCGTAAAACCAAGTGGAAGAAATGAACTGTCAGAGGATCTATTCACTGTAAAATATTTATCCTTCCCTGCTTCAGTTCCAGGCTGGCAAATGGGTACACCCCATGGCATGGGTAACTCAATTCAATATAGTAATGTGGTGCCCATGCCAAGTTTTACACTACCATCAAAATCGCTGAATCCGTTTGATGTCATCAATCGACCAACTCCAGTTCAAGCTCCAACTTTTCCTTCCATGTCATCCTTGCAAGGTGCTCTACCTACTGTAACACCTTCAGGTCCAATACACCCTTCAAGCCTAGGAAATCCATCTTTTGCCTGGAATCTGCCCTCTTCATCGTCATTTGTATCAGTGCTGCCTCCACAAGCACAAACTCTTCCATCAGCAATGGGACCAAGGGCATACATGGGACAACAAATGCCAACTAACATGCCAATGCCAAGGCAAGAAATTGGGACTTTTGGTACTCAGGCTGCTGCTTTTGGCTTCTCAAATCCAGATCAGCAGCTGACTGGTAGGTTGTCAACCCTAAGCCCCTTCCCTGCGGGGAACCCGTTCGGATGA 2100 0.4452 MASRVKEDEKNERIIRGLLKLTPNRRCINCNSLGPQYVCTNFWTFVCTNCSGIHREFTHRVKSVSMAKFTSQEVNALQEGGNQRAREIYFKEWDPQRHSFPDSSNIDRLRDFIKHVYVDRRFTGERTSDKPPRVKMGDKDDYFENRRMDTYQGGTKSPPYEDTYERHYSDRSSPGGRSPGYDQERRQYVDYKRSPGRPPIINDWRREDRFGDGKKFEDRRIPDGKNRVESQSPDPAKDLDSSGSPVVRPVRDILGENVLPLRIIEPPKTNSGRATDGSALTQRTASSNGLASSNGTSVEVKLETTKSLIDFDDDPEPTVLPAVPQAQQTTVTQPVVVPANSIDNNWASFDVAPEAKAAQGPSNVNPLESVLSQLSVPASLPAHVSAAQGPATGSALTASAAGASTVNSFSTFTSNVASVTSSVLSTASSLNNPGQWARLQYQQPFVLATVSQPTTQQVTLPVGGSSNNQLWNTTSVPTDTGHPSTPLPHSSHQEAKPANEAKSSVDSQTPTTSVKPSGRNELSEDLFTVKYLSFPASVPGWQMGTPHGMGNSIQYSNVVPMPSFTLPSKSLNPFDVINRPTPVQAPTFPSMSSLQGALPTVTPSGPIHPSSLGNPSFAWNLPSSSSFVSVLPPQAQTLPSAMGPRAYMGQQMPTNMPMPRQEIGTFGTQAAAFGFSNPDQQLTGRLSTLSPFPAGNPFG* 700
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g3021 699 Pfam Putative GTPase activating protein for Arf 13 124 IPR001164 GO:0005096
Dod04g3021 699 Gene3D Arf GTPase activating protein 1 133 IPR038508 -
Dod04g3021 699 ProSiteProfiles ARF GTPase-activating proteins domain profile. 12 130 IPR001164 GO:0005096
Dod04g3021 699 CDD ArfGap_AGFG 12 122 - -
Dod04g3021 699 MobiDBLite consensus disorder prediction 124 251 - -
Dod04g3021 699 MobiDBLite consensus disorder prediction 271 298 - -
Dod04g3021 699 PRINTS HIV Rev interacting protein signature 24 43 IPR001164 GO:0005096
Dod04g3021 699 PRINTS HIV Rev interacting protein signature 61 82 IPR001164 GO:0005096
Dod04g3021 699 PRINTS HIV Rev interacting protein signature 43 60 IPR001164 GO:0005096
Dod04g3021 699 SMART arf_gap_3 12 130 IPR001164 GO:0005096
Dod04g3021 699 MobiDBLite consensus disorder prediction 458 519 - -
Dod04g3021 699 MobiDBLite consensus disorder prediction 264 298 - -
Dod04g3021 699 PANTHER ARFGAP/RECO-RELATED 1 699 IPR044820 GO:0005096
Dod04g3021 699 SUPERFAMILY ArfGap/RecO-like zinc finger 11 123 IPR037278 -
Dod04g3021 699 MobiDBLite consensus disorder prediction 458 520 - -
Dod04g3021 699 MobiDBLite consensus disorder prediction 199 234 - -
Dod04g3021 699 PANTHER ARF GTPASE ACTIVATOR 1 699 - -
Dod04g3021 699 MobiDBLite consensus disorder prediction 124 147 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g3021 Dod-Chr4 54016771 54023641 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g3021 12 122 C2H2 Transcription Factor Family AT4G21160 35.043 9.59e-13 68.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g3021 - - gmx:100815114 973.385