Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g3001 ATGGATCCCTCGCCATCTCCTACTCCTCCTACCAACAACACAAGTAGTAGTCCTCCTTCGTCTACTCCTACCAACCACATAAGTAGTCCTCCTTCGTCTACTCTTACCAACTACATAAGTCCTACCGCTACTCCTACTCCTCCTTCTTCAGGCCCCTCAATCGGCATCATTGTTGGAATCGTCGTGGGGGCTGTGGCCTTTGTTCTCCTCTTTAGCATTTTGGTCGTTCGTTATAGGAGGAAGAACAAGAACAAACATCAAGGTGAGGCATCTAAAAATAACGGTTCCTCTCCTTCGTCCAATGATATAGAAGCGCCGGTGATGCCAGAGCCTCAACCTTCGCCCCTGGCTCCATGGCGCCCACTGCGGCTCAAACCATCACCACAGGAAAAGCGATCAGCTATGGGTTGGTCCGTAAGAATGAGGATTGCTTTAGGAGCTGCAAAAGGACTGGCGTATCTTCACGAGGATTGCCATCCCAAGATTATTCATCGTGATATCAAAGCTGCTAACATCCTTCTGGATTTTAAGTTTGAAGCAAAGCACCAACACACCTCCTCCTCCTCCTCTCTCTGCTTCTACTCCTACTCCTACCGACTACACAACACAAGTCTTCTCGCTCCTCCTCCTTCAGGCCCCTCAGTCGGCACCATTGTTGTAATCGTCGTGGGGGTTAAGGCCTTTGTTGTCCTCTTTAGCATTTTGTACGCTTGTTATAGGAGGAAGAACAAGAACAAGAAACGTAATGATGACCAGGGACCTCAACCTCAAGGGGAAGAGCGACCTGCAATGGATTGGTCCGCAAGGATGAGGATTGCTTTAGGAGCTGCAAAAGGACTGGCGTATCTTCACGAGGATTGTCATCCAAAGATCATTCATCGTGATATCAAAGCTGCTAACATCCTTCTGGACTTCCAGTTTGAAGCAAAGGTTGCAGATTTTGGACTTGCAAAGCTTTCGTCTGATGTCAATACTCATGTTTCCACTCGAGTGATGGGAACTTTTGGTGAGGTGAGTGGACCTACAAGTGGGTATGGTACTGTAAACACATCTGACGGGAGCAGTGGAGAAAGCCAGCAACGCCAGACCACAAGACCAGAAAGGGAAATAGGAATAAGAAAGACCAGCAACACCCATGGAACCTATTGA 1149 0.4813 MDPSPSPTPPTNNTSSSPPSSTPTNHISSPPSSTLTNYISPTATPTPPSSGPSIGIIVGIVVGAVAFVLLFSILVVRYRRKNKNKHQGEASKNNGSSPSSNDIEAPVMPEPQPSPLAPWRPLRLKPSPQEKRSAMGWSVRMRIALGAAKGLAYLHEDCHPKIIHRDIKAANILLDFKFEAKHQHTSSSSSLCFYSYSYRLHNTSLLAPPPSGPSVGTIVVIVVGVKAFVVLFSILYACYRRKNKNKKRNDDQGPQPQGEERPAMDWSARMRIALGAAKGLAYLHEDCHPKIIHRDIKAANILLDFQFEAKVADFGLAKLSSDVNTHVSTRVMGTFGEVSGPTSGYGTVNTSDGSSGESQQRQTTRPEREIGIRKTSNTHGTY* 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g3001 382 ProSitePatterns Serine/Threonine protein kinases active-site signature. 291 303 IPR008271 GO:0004672|GO:0006468
Dod04g3001 382 SUPERFAMILY Protein kinase-like (PK-like) 132 181 IPR011009 -
Dod04g3001 382 SUPERFAMILY Protein kinase-like (PK-like) 261 336 IPR011009 -
Dod04g3001 382 MobiDBLite consensus disorder prediction 83 128 - -
Dod04g3001 382 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 131 181 - -
Dod04g3001 382 MobiDBLite consensus disorder prediction 1 50 - -
Dod04g3001 382 MobiDBLite consensus disorder prediction 338 361 - -
Dod04g3001 382 Pfam Protein kinase domain 271 325 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dod04g3001 382 Gene3D Transferase(Phosphotransferase) domain 1 123 205 - -
Dod04g3001 382 ProSitePatterns Serine/Threonine protein kinases active-site signature. 162 174 IPR008271 GO:0004672|GO:0006468
Dod04g3001 382 MobiDBLite consensus disorder prediction 17 44 - -
Dod04g3001 382 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 258 336 - -
Dod04g3001 382 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 131 181 - -
Dod04g3001 382 MobiDBLite consensus disorder prediction 338 382 - -
Dod04g3001 382 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 258 336 - -
Dod04g3001 382 MobiDBLite consensus disorder prediction 245 264 - -
Dod04g3001 382 MobiDBLite consensus disorder prediction 89 103 - -
Dod04g3001 382 ProSiteProfiles Protein kinase domain profile. 124 382 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dod04g3001 382 MobiDBLite consensus disorder prediction 1 16 - -
Dod04g3001 382 MobiDBLite consensus disorder prediction 108 122 - -
Dod04g3001 382 Gene3D Transferase(Phosphotransferase) domain 1 252 340 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g3001 Dod-Chr4 53711479 53754850 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g3001 257 339 Trihelix Transcription Factor Family AT1G70460 72.289 4.10e-36 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Dod04g3001 Pkinase 4.3e-12 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g3001 - - pxb:103962969 149.058