Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g2997 ATGCCATCCCTCTCTATCTTCCCACCTCAGCCATCGCTTCAAAACCCTAACTTGGACCATGCCCACCTCTTCAAATCCATCCAAACCCTCAATTTCGGTTTAACTTCATGGCCACACTGTCACCGCCACCACTTCTCCCACCTCACCAAAACCACTAAATCTCTTCGCCTTACGATACAGAACCGTAAGATTCGATGCAATGTTTTGAAGGATTCCGGCGAGGACGTTAAGGCGGTGTTTGAATCCGACGGCGGAGAAGGTGGCGGCGGCGACGGCGATGGTGGTGGGGACGAGAGAGAGGTGAAGAAAAAAGAAGGGCCATTTCCAGAATGGTTGAATTTCACTTCCGATGACGCGAAAACGGTGTTTGCGGCTCTGGCAATATCGCTTGCGTTTCGTACCTTCGTGGCTGAGCCGAGGTACATTCCTTCGCTGTCAATGTATCCTACCTTTGATGTTGGAGATCGAATTGTTGCTGAAAAGGTTTCATACTACTTTAGAAAGCCATGTGCAAATGACATAGTGATATTTAAGAGCCCTCCTGTCCTTCAAGAAGTTGGATATACTGATGATGATGTTTTTATAAAACGGGTGGTTGCAAAGGAAGGTGATATTGTGGAGGTTCGTAAAGGACGTCTTATCGTTAATGGGGTTGAGAGGAATGAAAAGTTCGTCCTTGAACCACCTTCTTATGAAATGAAACCCACACGTGTGCCAGAGAACTACGTCTTTGTGATGGGAGACAACCGCAATAACAGCTATGATTCCCATGTGTGGGGTCCCTTGCCGGCAAAGAATATTATTGGTAGATCAGTACTCCGCTATTGGCCACCAAATAGAATAGCGGGCACTGTTTCTGAGGACACTTGTCCTGTTGAAACCAAGCAGGAGCCTACCATGGCATCTCAATGA 912 0.4726 MPSLSIFPPQPSLQNPNLDHAHLFKSIQTLNFGLTSWPHCHRHHFSHLTKTTKSLRLTIQNRKIRCNVLKDSGEDVKAVFESDGGEGGGGDGDGGGDEREVKKKEGPFPEWLNFTSDDAKTVFAALAISLAFRTFVAEPRYIPSLSMYPTFDVGDRIVAEKVSYYFRKPCANDIVIFKSPPVLQEVGYTDDDVFIKRVVAKEGDIVEVRKGRLIVNGVERNEKFVLEPPSYEMKPTRVPENYVFVMGDNRNNSYDSHVWGPLPAKNIIGRSVLRYWPPNRIAGTVSEDTCPVETKQEPTMASQ* 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g2997 303 MobiDBLite consensus disorder prediction 79 102 - -
Dod04g2997 303 PRINTS Bacterial leader peptidase 1 (S26A) family signature 135 151 IPR000223 GO:0006508|GO:0008236|GO:0016020
Dod04g2997 303 PRINTS Bacterial leader peptidase 1 (S26A) family signature 194 206 IPR000223 GO:0006508|GO:0008236|GO:0016020
Dod04g2997 303 PRINTS Bacterial leader peptidase 1 (S26A) family signature 238 257 IPR000223 GO:0006508|GO:0008236|GO:0016020
Dod04g2997 303 TIGRFAM sigpep_I_bact: signal peptidase I 120 278 IPR000223 GO:0006508|GO:0008236|GO:0016020
Dod04g2997 303 CDD S26_SPase_I 138 270 IPR019533 GO:0004252|GO:0006465
Dod04g2997 303 PANTHER THYLAKOIDAL PROCESSING PEPTIDASE 2, CHLOROPLASTIC-RELATED 99 287 - -
Dod04g2997 303 ProSitePatterns Signal peptidases I serine active site. 144 151 IPR019756 GO:0004252|GO:0016021
Dod04g2997 303 PANTHER SIGNAL PEPTIDASE I 99 287 IPR000223 GO:0006508|GO:0008236|GO:0016020
Dod04g2997 303 SUPERFAMILY LexA/Signal peptidase 133 282 IPR036286 -
Dod04g2997 303 Pfam Signal peptidase, peptidase S26 119 276 IPR019533 GO:0004252|GO:0006465
Dod04g2997 303 ProSitePatterns Signal peptidases I signature 3. 243 256 IPR019758 GO:0004252|GO:0016021
Dod04g2997 303 Gene3D Umud Fragment, subunit A 132 290 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g2997 Dod-Chr4 53689618 53695820 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g2997 147 277 MADS-box Gene Family AT1G29960 33.083 1.19e-11 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g2997 K03100 - gmx:100815810 422.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod04g2997 04 53689618 53695820 Dod04g2997 04 53689618 53695820 ECH