Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g2988 ATGGAGACGGAGACGGACCCTCCACCAAAAAGCTGGAGCATCCATACCCGATCCGAAATCATTGCCAAGTACCAGATTATGGAGCGGGTCGGCTCCGGTGCCTACGCCGACGTCTACCGTGGTCGCCGCCTCTCCGACGACCTCACCGTCGCCCTCAAGGAGATCCACGACTACCAGTCCGCCTTCCGGGAGATCGAGGCGCTGCAGATGCTGCAGGGATCCCCAAACGTCGTCGTATTGCACGAGCACTTCTGGCGCGACGACGAGGACGCCGTTCTCGTCCTCGAGTACCTCAGAACCGACCTTGCCACCGTCATCGCCGACGCCCGCAGCAAGGGCCTCCCTGTCGGCGATATGAAGCGCTGGATGATCCAGATCCTCTGCGGGGTCGACGCTTGTCACTGGAACATGATCGTGCATCGCGATTTGAAGCCTGGTAATCTCTTGATCTCCGATGACGGCGTCCTCAAGTTGGCAGATTTTGGACAGGCAAGGATGCTTACAGAGCCAGGATTTGATGGTTCTGAGGAGAACCGACAACCATATGAACATGATACTACTAATAATGAAAGTTCCCTTCATGATCCCGTGGCTTTTCCTTTGACGGACAACTTAAGCCAAGTAGGGTGTGGAAATCAAGAGCAGGGTACTGTCCTTCATGAAGAATATTTTAGAGTCTTAGATGAACTGAAAACAAAGAGCTTCACAGATGATATTGATAAGGATTCAAACATTCCTGATGGAAATACCTCTTGTCTTGCAACATACACTGCAAGTGATATAGATGATGATCCTTTGAAGACCAATTTTAGTTATGAAGCTAGGGAGGAGGATAGTAAAGAACTTGGTTGTCTCACATCATGCGTTGGAACTCGTTGGTTTAGGGCTCCTGAGCTGCTTTATGGATCCACAAACTATGGTTTAGAGGTTGATCTCTGGTCCTTGGGATGTATATTTGCAGAGCTCTTAACTCTGGAGCCCTTATTTCCTGGAACAGCTGATATTGATCAGCTGAGCAGAATTATTAATGTTTTGGGCAACCTCGATGAGAAAGCTTGGCCTGGTTGTTCTAAACTTCCTGATTATGGAATAATCTCGTTTAGTAAGGTGGAAAACCCTGTTGGTCTAGAAGCCTGCCTACCCAACCGCACCCTCGATGAAGTGTCTTTAGTCAAAAAACTGGTTTGTTATGATCCGGCCCGGAGAGCGACAGCAATGGAGCTCCTCCATGACAACTACTTTAATGAAGAACCTTTTCCTGTCCCTGTTTCTGAGCTGCGTGTTCCTTTGAACAGAAAGGGAGAAGATGAAGACTCCCCTGGAGGATGGCATGATTACAATGACATGGATTCTGATTCTGATTTTGAGGATTTTGGCCCTGTGAATTTCACTAGAACTGGTACCGGTTTCTCCGTACAGTTTCCTTGA 1428 0.4867 METETDPPPKSWSIHTRSEIIAKYQIMERVGSGAYADVYRGRRLSDDLTVALKEIHDYQSAFREIEALQMLQGSPNVVVLHEHFWRDDEDAVLVLEYLRTDLATVIADARSKGLPVGDMKRWMIQILCGVDACHWNMIVHRDLKPGNLLISDDGVLKLADFGQARMLTEPGFDGSEENRQPYEHDTTNNESSLHDPVAFPLTDNLSQVGCGNQEQGTVLHEEYFRVLDELKTKSFTDDIDKDSNIPDGNTSCLATYTASDIDDDPLKTNFSYEAREEDSKELGCLTSCVGTRWFRAPELLYGSTNYGLEVDLWSLGCIFAELLTLEPLFPGTADIDQLSRIINVLGNLDEKAWPGCSKLPDYGIISFSKVENPVGLEACLPNRTLDEVSLVKKLVCYDPARRATAMELLHDNYFNEEPFPVPVSELRVPLNRKGEDEDSPGGWHDYNDMDSDSDFEDFGPVNFTRTGTGFSVQFP* 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g2988 475 PANTHER CELL DIVISION PROTEIN KINASE 14 430 - -
Dod04g2988 475 ProSiteProfiles Protein kinase domain profile. 24 414 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dod04g2988 475 MobiDBLite consensus disorder prediction 176 190 - -
Dod04g2988 475 MobiDBLite consensus disorder prediction 169 196 - -
Dod04g2988 475 ProSitePatterns Serine/Threonine protein kinases active-site signature. 138 150 IPR008271 GO:0004672|GO:0006468
Dod04g2988 475 SMART serkin_6 24 414 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dod04g2988 475 Gene3D Transferase(Phosphotransferase) domain 1 253 428 - -
Dod04g2988 475 SUPERFAMILY Protein kinase-like (PK-like) 9 426 IPR011009 -
Dod04g2988 475 MobiDBLite consensus disorder prediction 431 449 - -
Dod04g2988 475 Gene3D Transferase(Phosphotransferase) domain 1 14 194 - -
Dod04g2988 475 MobiDBLite consensus disorder prediction 431 450 - -
Dod04g2988 475 PANTHER CYCLIN-DEPENDENT KINASE 10 14 430 - -
Dod04g2988 475 ProSitePatterns Protein kinases ATP-binding region signature. 30 53 IPR017441 GO:0005524
Dod04g2988 475 Pfam Protein kinase domain 24 170 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dod04g2988 475 Pfam Protein kinase domain 281 414 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g2988 Dod-Chr4 53645695 53648245 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g2988 8 475 Core Cell Cycle Gene Families AT4G28980 64.076 0.0 623
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CCRK Dod04g2988 Pkinase 7e-32 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g2988 - - mtr:MTR_8g103240 783.097
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod04g2988 04 53645695 53648245 Dod02g3558 02 73131547 73135424 PCT