Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g2985 ATGACCACCGCAACCGCCACCACTTCCTCATCTCAGATCCTCCGCCACACAACCGCTTTCATCTCCGGCGTAATCTCGCAATCAGAGCTCCGGCGCCACCTCGTCGCCATTCTCCGGCGCGAGGCCCCAATCTCCGATCAAGCCACCATCAATCACCTCAAACTCGCGGCCGAAACCGTGGAAAACGCCATCACGTTCTCCAGCGCCGCCATCCGCAGCTCCTCCCTCAGCCTCGCGGAGAAGCTCCTCCTCCCTCTCCCCGAACTCCCGCTCTCCTCCTTCCTCCTCTCCCTCGTCTTCGCCCTCTCCCACCGCTCCGTCGATTCCGCCCTAAGGCTCCTCCGAATCTTCCACTCCACACCTTCCCTCGCTAGATCCGAAATCGCGCCGATTCTCTACGATCACCTGTTTTCTCCCCACCTGCTCCCTGTTTTCCGGTGGTTCGATGAGGAGAGAACGCGGGTTTTGTCCAATTCGACCAGCGATGCGAGTGAATACGAGCATTCGGTTGCGGAGGAGTCGGTGGTGCTGCCGTGCGCGAAACTGTTGTCGAGGATGAGCGGGGATCAGGCTTCGAAGCTGAGGGAGCTGGAGAGGGAGTACGAAGAGGCGCTCGACGAGAATTGCAGGGTTGTTGCGACGTACTTCGAAGAGGTTCTGGTGTGTGAAAGTGGAGGAGAAGCGTCGATTAGTCCGCCATTGTTGATGCTGAAGAGCGCCGAGGAAGGGGATGGAGGGAAGAACAAAGAGGAGATCGAAGAAACCGAAATGCCTGTGTTGGAGAACGGACGGTATAATCCAATATGGTCCGAAAGGGAAACATCGATTGAGTTTATGAGCAACACTTCCAGCAGCAAATCCTCGCACGCACCATGTTATCCTCAAAGAGTCTCTCCCATAATCCTTAAACTCCAAAAATCTTCAAAAACTTGTACAACACCAGTCTATTTAAAATCAACCGCTGAAGCAGAATCTTCTTTAGATGAGAATTTGCCTTGTTCTTCTTCAGATTCTGAAGCAGAAAGTGAGGAAAAGGACAAAAATGTGGCATTGTTGGAGGAGCCTCGACAAAGCCAAACTCAAGAACAAAGGCAAACCATCTTCAAAGAATCCAGGGGTTCCCCAGACTATCCTATGGCAGAGTACGATAACCCGCTGAATGGAAGTGGAAAACATACACCTCCCAAGGACTTTGTCTGTCCAATAACTAGTAACATATTTGATGATCCTGTGACTCTTGAGACAGGTCAGACATACGAACGTAAAGCCATAGAGGAATGGTTCAGAACTGGGAACTCAACTTGTCCCATCACTCGCCAGAAATTGCAGAACACTCAGCTACCTAAAACAAATTATGTTCTCAAACGACTGATTGCAAGCTGGAAAGAACAGAACCCCAGTTCAATCCCATTGCCATGTGAGAGTCCATATGAAGATACTGAGAGAGTACCAAATTCAACAAAGCTTTCAACTTCGCCTAAAGATGTTGTAACACAAGCCACCGTTGATGGGATGATTAGTGAGTTACGCAATGCAATCAATAACCTGTACATGTCAGAGATTCTTGAGGAATCTGAAATGGCCGTGCTTCATGTAGAAAAGATGTGGAGAGGAGTGAAACTAGGAGTGGATATCCATTGCATGCTATCAAAACCTCCGATAATTAATGGGTTTATGGAGATCCTTTTCAATTCTGTTCAGCCTCAGGTGCTGCAAGCAGCAGTTTTCCTTCTGGCCGAGATGGGCTCTAAAGACCATGCTGTTATTCAGACGCTTACACGTGTGGACACTGATGTAGAATGCATCATGGCTCTTTTTAATAAAGGGTTGACAGAGGCTGTTGTGCTGTTGTATCTTCTAAAACCTTCCACCACAAGTCTTGCTGAGATGGTCACACCGGAGTCTCTCATGGAAGTATTCAATGAGAAAGAGGAGGACTTGGTTAATATGTGTTTGAAGCCCAAAACAGCTGCCTTGCTTTTACTGGCACAGATTATTGGAAGCGGTGAAGAAAGAGTTGCTTCTTCAGCTGTGAAAGTGTGTTCTCTGAAAAGGCAATTGGAACTATTGTGGGCAGTTTGGGAGCTGAGTGGGCAGAGGAGAGGATTGCTGCAGTTGAGATCTTATTGA 2130 0.4878 MTTATATTSSSQILRHTTAFISGVISQSELRRHLVAILRREAPISDQATINHLKLAAETVENAITFSSAAIRSSSLSLAEKLLLPLPELPLSSFLLSLVFALSHRSVDSALRLLRIFHSTPSLARSEIAPILYDHLFSPHLLPVFRWFDEERTRVLSNSTSDASEYEHSVAEESVVLPCAKLLSRMSGDQASKLRELEREYEEALDENCRVVATYFEEVLVCESGGEASISPPLLMLKSAEEGDGGKNKEEIEETEMPVLENGRYNPIWSERETSIEFMSNTSSSKSSHAPCYPQRVSPIILKLQKSSKTCTTPVYLKSTAEAESSLDENLPCSSSDSEAESEEKDKNVALLEEPRQSQTQEQRQTIFKESRGSPDYPMAEYDNPLNGSGKHTPPKDFVCPITSNIFDDPVTLETGQTYERKAIEEWFRTGNSTCPITRQKLQNTQLPKTNYVLKRLIASWKEQNPSSIPLPCESPYEDTERVPNSTKLSTSPKDVVTQATVDGMISELRNAINNLYMSEILEESEMAVLHVEKMWRGVKLGVDIHCMLSKPPIINGFMEILFNSVQPQVLQAAVFLLAEMGSKDHAVIQTLTRVDTDVECIMALFNKGLTEAVVLLYLLKPSTTSLAEMVTPESLMEVFNEKEEDLVNMCLKPKTAALLLLAQIIGSGEERVASSAVKVCSLKRQLELLWAVWELSGQRRGLLQLRSY* 710
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g2985 709 MobiDBLite consensus disorder prediction 322 395 - -
Dod04g2985 709 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 7 682 - -
Dod04g2985 709 SUPERFAMILY RING/U-box 392 466 - -
Dod04g2985 709 MobiDBLite consensus disorder prediction 338 352 - -
Dod04g2985 709 MobiDBLite consensus disorder prediction 470 491 - -
Dod04g2985 709 ProSiteProfiles U-box domain profile. 393 468 IPR003613 GO:0004842|GO:0016567
Dod04g2985 709 CDD RING-Ubox_PUB 398 440 IPR045210 -
Dod04g2985 709 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 7 682 - -
Dod04g2985 709 Coils Coil 187 207 - -
Dod04g2985 709 MobiDBLite consensus disorder prediction 353 370 - -
Dod04g2985 709 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 383 469 IPR013083 -
Dod04g2985 709 Pfam U-box domain 395 465 IPR003613 GO:0004842|GO:0016567
Dod04g2985 709 SMART Ubox_2 397 461 IPR003613 GO:0004842|GO:0016567
Dod04g2985 709 MobiDBLite consensus disorder prediction 322 337 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g2985 Dod-Chr4 53631834 53634532 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g2985 376 496 U-box Gene Family AT1G67530 43.443 6.17e-19 89.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g2985 - - gmx:100808867 855.514