Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g2984 ATGAATAGAGGTGTCCTGCAAAGCTTACCGGTGCAGCAAATGATCATGGCTGGGAACCCTAACAACTGGTGGAACATCAATCCCATGCGCTCTCCAAACTCTCCTCAGCAAGCTTCTCCTAATTTCTTGTCCACTCCTGCATCTTCCAACTTTCTAACTCCATATGCCCCCACTTCTTCTCTTCCTTTTCCTTCTTGGCATGAAAATCAAGAACTTCCCGACTCATCATGGAGCCAGCTACTCATGAGTGGAATGGTGTCTGAAGAAGAAAAGGCGGCAGCTGGGATGTGCCAGCAGGTGTTTGAAGGCAACAAGAAGTTGGAGAGCTGGGAGGAGCAAATGCTAATAAGTGAGGCTACTCCTCTTGTTGATGTTAAGCAAGAGAGCTCGGTAAACAGCTATGTGTATGGGCATGGAAGCGAAGATTTCCAGGCTGCAAAACCCATCACCTGGTCTCAAATAGTGCCTCCTACTCCTGCAGCAGCAGCTTCTTCTCCGAAATCCTGTGTCACAAGTTTCAGCAGCAGCATGTTGGATTTCTCCCTCAATAAGACCGAGGAAAGGCCTCCTCCACCAGATCCATCTTCTGAGTGCAATAGCACTGGAGCTGGTGGGGCATTCAAGAAAGCTAGGGTTCAACCGTCTACAGCTCAGTCGACCTTCAAGGTTAGGAAGGAGAAGTTAGGTGACAGAATCACAGCCCTTCATCAACTCGTTTCCCCATTTGGGAAGACTGACACTGCGTCTGTCTTATTAGAAGCTATCGGGTATATCAGATTCCTTCAGAGTCAAATTGAGGCCCTTAGCTTACCATACTTGGGCAGTGGAACAGGGAACACGAGGAACCAACAATCCGTTCACCAAGGAGAGAAGAATTGTATATTCCCTGAAGACCCTGGTCAGCTGCTGAATGAAAACTGCTTGAAGAGGAAAGCAGCTTGTGAGCAGCTGGATTCTGAAGAAGAGCCAAAGAAAGACCTGAGGAGTAGAGGGTTGTGTCTGGTTCCAGTGTCATGCACACTGCAAGTTGGAAGTGACAATGGAGCTGATTATTGGGCTCCTGCCTTTGGCGGGGGATTTCGGTAG 1086 0.4853 MNRGVLQSLPVQQMIMAGNPNNWWNINPMRSPNSPQQASPNFLSTPASSNFLTPYAPTSSLPFPSWHENQELPDSSWSQLLMSGMVSEEEKAAAGMCQQVFEGNKKLESWEEQMLISEATPLVDVKQESSVNSYVYGHGSEDFQAAKPITWSQIVPPTPAAAASSPKSCVTSFSSSMLDFSLNKTEERPPPPDPSSECNSTGAGGAFKKARVQPSTAQSTFKVRKEKLGDRITALHQLVSPFGKTDTASVLLEAIGYIRFLQSQIEALSLPYLGSGTGNTRNQQSVHQGEKNCIFPEDPGQLLNENCLKRKAACEQLDSEEEPKKDLRSRGLCLVPVSCTLQVGSDNGADYWAPAFGGGFR* 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g2984 361 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 212 261 IPR011598 GO:0046983
Dod04g2984 361 PANTHER OS05G0228400 PROTEIN 18 347 - -
Dod04g2984 361 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 222 272 IPR036638 GO:0046983
Dod04g2984 361 Gene3D - 217 271 IPR036638 GO:0046983
Dod04g2984 361 MobiDBLite consensus disorder prediction 181 220 - -
Dod04g2984 361 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 18 347 - -
Dod04g2984 361 CDD bHLH_AtbHLH_like 220 269 IPR045239 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g2984 Dod-Chr4 53623255 53626494 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g2984 1 302 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G29100 42.779 2.81e-66 211
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g2984 - - gmx:100785156 545.043
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod04g2984 04 53623255 53626494 Dod04g2984 04 53623255 53626494 ECH
Dod04g2984 04 53623255 53626494 Dod02g3552 02 73065349 73069966 PCT