Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g2982 ATGTCTGTGCCATCAGAACAGGGGTATGTAGGCTTGGGAGAGGTTCCTCCAATGGAAAGCTCCGAAAAGTTTAACGTTGGTTTGAACCTCAAAGCCACAGAGTTGAGGCTGGGGTTGCCTGGTTCCGAGTCCCCAGAGAGGGAAGCCCCACATGGCGGCATGGTAAAGAGTTTGGTGTGTGCAGGGGCCAAGAGGGGTTTCTCGGACGCCATTGATGGAGGTTCTGGGAAGTGGGTTCTCTCTGGGAACGCTGGATCTGAATTGGGTTTGGGCAAAGATGGTGGCTTGTTCTCTCCCAGGGCTGCTGGTGTTGGTGACTGCACCAACAAACAAGCGCCTTTGGGTGCTTCAGTATTGAAAGAAAGTGTTGCACAGTCTTCAAAGCCATTGCATGAGAAAAAGCCCCAGGTTTCTGCTCATGCTTCAAAGGCACAAGTTGTTGGATGGCCACCAATCCGTTCTTTTAGGAAGAACTCAATGGCTACTCAGCCTCAAAAGAACGAAGTTGATGCAGAAGTCAAGCCTGGATGCCTTTATGTAAAAGTCAGCATGGATGGTGCCCCATACTTGCGGAAAATGGATCTGAACAATTTTAGCTCCTACAGGGAGCTGTCTTCAGCACTCGAAAAGATGTTTAGTTGTTTCACACTCGGTCAATGTGGCTCTCATGGAGTTTCTGGTCGAGATAATTTAAGTGAAAGTGGATTGACCGATCTCCTTCATGGTTCGGAATATGTCCTCACCTACGAAGACAAGGATGGTGATTGGATGCTAGTTGGTGATGTTCCATGGGAGATGTTCACTGACTCTTGCAAGAGGTTGAGGATAATGAAGAGTTCTGAAGCAATTGGGCTAGCACCTAGAGCCATGGAAAAGTGCAAAAATCGCAACTAG 894 0.4832 MSVPSEQGYVGLGEVPPMESSEKFNVGLNLKATELRLGLPGSESPEREAPHGGMVKSLVCAGAKRGFSDAIDGGSGKWVLSGNAGSELGLGKDGGLFSPRAAGVGDCTNKQAPLGASVLKESVAQSSKPLHEKKPQVSAHASKAQVVGWPPIRSFRKNSMATQPQKNEVDAEVKPGCLYVKVSMDGAPYLRKMDLNNFSSYRELSSALEKMFSCFTLGQCGSHGVSGRDNLSESGLTDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFTDSCKRLRIMKSSEAIGLAPRAMEKCKNRN* 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g2982 297 MobiDBLite consensus disorder prediction 123 143 - -
Dod04g2982 297 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 18 290 IPR003311 GO:0005634|GO:0006355
Dod04g2982 297 Pfam AUX/IAA family 33 288 IPR033389 -
Dod04g2982 297 Gene3D - 172 290 - -
Dod04g2982 297 PANTHER AUXIN-INDUCED PROTEIN 18 290 - -
Dod04g2982 297 ProSiteProfiles PB1 domain profile. 177 279 IPR000270 GO:0005515
Dod04g2982 297 SUPERFAMILY CAD & PB1 domains 174 278 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g2982 Dod-Chr4 53565500 53568940 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g2982 180 287 B3 DNA Binding Superfamily AT4G23980 30.556 7.05e-09 54.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Dod04g2982 AUX_IAA 5.8e-86 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g2982 K14484 - gmx:100803754 446.432
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod04g2982 04 53565500 53568940 Dod04g2982 04 53565500 53568940 ECH
Dod04g2982 04 53565500 53568940 Dod02g3551 02 73004941 73007471 PCT