Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g2974 ATGGAACGCATCGTCGGCGGCAAGTACAAGCTCGGCCGCAAGATCGGAAGCGGATCCTTCGGTGAAATCTATCTCGCTACGCATATTGACACCTTCGAGATCGTCGCCGTCAAGATCGAGAACAGTAAAACGAAGCATCCGCAACTGCTTTATGAGGCTAAGCTCTACCATATTATTCAAGGAGGAAGTGGAATTCCGAGCATAAAATGGTCTGGTCTAGACGGGGAGGATAATGTGCTTGTTCTTGATTTGCTGGGGCCCAGCCTTGAGGATCTTTTTGTGTATTGTGGAAGGAAGTTTTCATTGAAGACAGTGTTAATGTTGGCTGATCAAATGATCACTAGAATAGAATATGTGCATTCTAAAGGATTTTTACACAGGGATATAAAACCTGATAACTTTCTCATGGGACTTGGTCGGAAGGCCAACCAGGTTTACATAATTGATTTTGGGCTTGCAAAACGATATAGGGACTCCACGACCAATCGCCACATTCCTTACAGGGAGAACAAAAACTTAACGGGGACTGCTCGATATGCAAGTTGCAATACTCATCTTGGAATTGAGCAAAGCCGAAGGGATGATTTAGAGTCACTGGGATATGTACTTCTGTACTTCCTCAGAGGAAGCCTTCCTTGGCAAGGTCTAAAGGCTGCAACAAAGAAACAAAAGTATGATAAAATATGTGAGAAGAAATTATCAACTCCTATTGAGGTACTCTGCAAATCTCATCCAGTAGAGTTTGCTTCATACTTCCATTATTGCCACTCTTTGACATTTGATCAGCGGCCTGATTATGGATTCTTGAAGCGCTTATTTCGGGATCTTTTTGCTCGAGAAGGTTATGAATTTGATTACGTTTTTGATTGGACCATTTTAAAGTACCAGCAGGCACAAAAGAATAGAGTTCAACCTCACTTGTCTCCAGTTCCTGGGGTGAGTAATAGTCGTGCAATGCCAGTGGATATTGACAACCATCAAGGGCATCTCTCAGACCGCATTAGACCAGGCAATGCCACTGGGTCTGGTGTTAAAGTTCAGTTTAAATCACCCATGGTTAAAAATTTGAGTTCAGAACATCCTCTCGACAAGAATATTTTTGGTGAAGCACATATGCCCATGCCCTCTACATCATATTCTCCTGCTGGTACTTCAAAAAGGAACTTATTGAAGCCTGCCTTGCCTAATGAAGCTTCCAATCCCGGACATGGGCAAGGTGGTCAAATTGGCCCTTCAAGTAGCTGGATGTCATCTCTGCAGCGTATGCCTTCTGCCAAATGA 1281 0.434 MERIVGGKYKLGRKIGSGSFGEIYLATHIDTFEIVAVKIENSKTKHPQLLYEAKLYHIIQGGSGIPSIKWSGLDGEDNVLVLDLLGPSLEDLFVYCGRKFSLKTVLMLADQMITRIEYVHSKGFLHRDIKPDNFLMGLGRKANQVYIIDFGLAKRYRDSTTNRHIPYRENKNLTGTARYASCNTHLGIEQSRRDDLESLGYVLLYFLRGSLPWQGLKAATKKQKYDKICEKKLSTPIEVLCKSHPVEFASYFHYCHSLTFDQRPDYGFLKRLFRDLFAREGYEFDYVFDWTILKYQQAQKNRVQPHLSPVPGVSNSRAMPVDIDNHQGHLSDRIRPGNATGSGVKVQFKSPMVKNLSSEHPLDKNIFGEAHMPMPSTSYSPAGTSKRNLLKPALPNEASNPGHGQGGQIGPSSSWMSSLQRMPSAK* 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g2974 426 PANTHER CASEIN KINASE 1-LIKE PROTEIN 3 1 411 - -
Dod04g2974 426 MobiDBLite consensus disorder prediction 373 426 - -
Dod04g2974 426 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Dod04g2974 426 SUPERFAMILY Protein kinase-like (PK-like) 4 290 IPR011009 -
Dod04g2974 426 Pfam Protein kinase domain 9 227 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dod04g2974 426 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Dod04g2974 426 MobiDBLite consensus disorder prediction 401 426 - -
Dod04g2974 426 ProSiteProfiles Protein kinase domain profile. 9 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dod04g2974 426 PANTHER CASEIN KINASE-RELATED 1 411 - -
Dod04g2974 426 Gene3D Transferase(Phosphotransferase) domain 1 1 318 - -
Dod04g2974 426 SMART serkin_6 9 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dod04g2974 426 CDD STKc_CK1_delta_epsilon 8 282 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g2974 Dod-Chr4 53519304 53524981 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g2974 9 215 EF-hand Containing Proteins AT4G23650 29.577 7.02e-15 74.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Dod04g2974 Pkinase 1.8e-27 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g2974 K08960 - gmx:100800342 780.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod04g2974 04 53519304 53524981 Dod02g3541 02 72776269 72785485 PCT