Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g2963 ATGGGTGAGCAACCAAGCTCAGAGACAGAGACAAGCCCGAACTTTTCTACACCTTCCCCATCATCATCATCGTCATCATCGTCATCGCCGCCACGTGTCCAAAGCTCCACTGCCGCTGCAGCCCAGCTACCCGACCCGGATAAGAAGTGGGGCAAGCGGGCCAGGCAGGACAGCAAGCATCCGGTGTACAGAGGGGTCCGAATGCGGGCCTGGGGGAAGTGGGTATCAGAAATCCGCGAGCCCCGCAAGAAGAACCGCATCTGGCTCGGCACCTTCGCTACCCCGGAGATGGCCGCCCGTGCCCACGACGTCGCCGCCCTGGCCATTAAAGGCACCTCCGCCATCCTCAACTTCCCAGAACTCGCCGCCTCCTTCCCCCGACCCCACTCCAACTGCCCCCGCGACGTCCAGACCGCCGCCACCAAAGCCGCTGCCATGGATTTCTTCGCTACCAAAACGGCGTCGCATTCATCATCATCATCTCCTTCTTCTTCGTCGTCGTTGGCGGTGTCTTGTTCCTTTTCCTCCTCCTCCTCCGGCGACCCTTCGACGCCGGAGGAGCTGGGGGAGATAGTGGAGCTGCCACCTCTGGGAACGAGTTTCGAATCGCCCGACCCGAATAACGAGTTGGTGTTTTTGGACCCGGTGGACGGGTGGCTCTATCCTCACCCTTGGTATCACAGCATTTATGACGAGAGGGATTGTGGTGGGTATTTTATTGGGGATCAGATTTCAATGCACGACCCTCAGATGATTCCTTCTGGTTTTGAGGGTTCCCTCTGGCAACACTAA 792 0.5871 MGEQPSSETETSPNFSTPSPSSSSSSSSSPPRVQSSTAAAAQLPDPDKKWGKRARQDSKHPVYRGVRMRAWGKWVSEIREPRKKNRIWLGTFATPEMAARAHDVAALAIKGTSAILNFPELAASFPRPHSNCPRDVQTAATKAAAMDFFATKTASHSSSSSPSSSSSLAVSCSFSSSSSGDPSTPEELGEIVELPPLGTSFESPDPNNELVFLDPVDGWLYPHPWYHSIYDERDCGGYFIGDQISMHDPQMIPSGFEGSLWQH* 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g2963 263 Pfam AP2 domain 61 111 IPR001471 GO:0003700|GO:0006355
Dod04g2963 263 MobiDBLite consensus disorder prediction 46 61 - -
Dod04g2963 263 SMART rav1_2 62 125 IPR001471 GO:0003700|GO:0006355
Dod04g2963 263 MobiDBLite consensus disorder prediction 1 41 - -
Dod04g2963 263 SUPERFAMILY DNA-binding domain 62 120 IPR016177 GO:0003677
Dod04g2963 263 ProSiteProfiles AP2/ERF domain profile. 62 119 IPR001471 GO:0003700|GO:0006355
Dod04g2963 263 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 10 262 - -
Dod04g2963 263 Gene3D AP2/ERF domain 62 120 IPR036955 GO:0003700|GO:0006355
Dod04g2963 263 PRINTS Ethylene responsive element binding protein signature 63 74 IPR001471 GO:0003700|GO:0006355
Dod04g2963 263 PRINTS Ethylene responsive element binding protein signature 85 101 IPR001471 GO:0003700|GO:0006355
Dod04g2963 263 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 3-LIKE 10 262 - -
Dod04g2963 263 CDD AP2 63 121 IPR001471 GO:0003700|GO:0006355
Dod04g2963 263 MobiDBLite consensus disorder prediction 1 61 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g2963 Dod-Chr4 53425340 53427054 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g2963 31 236 AP2-EREBP Transcription Factor Family AT5G11590 59.135 1.98e-64 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Dod04g2963 AP2 6.9e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g2963 K09286 - gmx:100778201 269.626
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod04g2963 04 53425340 53427054 Dod02g3532 02 72646746 72648325 PCT