Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g2944 ATGTCTAATTTGCATTCCATTTTCCATGTTATACTACTTCTCCTCCTCCTTCTTCTTCTTCAAAATCCAAGAGCAACACAATGCCATACCAAGGCAATTCGACCAAGGCGTTCTGCTGGGAGTGTGCTGCCCATCAACATGACACAAGTCCGATTGTCAGAACAACAGTTCATGAAATGGGTGAAATTCGTAGGTGGCCTCAAACACAGTGTCTTTGGGACTGCCAAAAACAAGCTTTTTCCTTCCCACACATTGCACGTTTCTAAGAAACCCGGTAAAGGACGTTTCTCCTCCATTCAAGCAGCCATTGATTCCCTTTCATTCATCAACCTAGTGAGAGTGGTCATTAAAGTGCATGCAGGGGTTTACACAGAGAAAGTTAATATTCCTCCTTTGAAATCATTCATAACCATACAAGGAGAAGGCGCAGATAAGACCATTGTGCAATGGGGTGACACTGCTCAAACGCCTGGGCCAAAAGGCCAGCCACTGGGAACCTATGGTTCTGCAACTTTTGCAGTGAACTCACCTTACTTCATTGCCAAGAACATAACATTTAAAAACACCACCCCAGTTCCAGCACCAGGAGCAGTTGGAAAGCAGGCAGTGGCACTTAGAATTTCAGCAGATACAGCAATATTCTTGGGCTGCAGATTCTTGGGAGCACAGGACACACTCTATGATCATCTGGGCAGGCATTACTACAAAGATTGTTATATTGAAGGCTCTGTTGATTTCATATTCGGCAATGCTCTCTCTTTATTTGAGGGGTGTCACGTGCACGCGATAGCACAGAATACAGGGGCCTTAACAGCACAAGGAAGGAGTAGTTTATTAGAGGACACGGGGTTCTCGTTTGTTCACTGTAAGGTCACGGGGTCAGGAGCACTATATCTTGGAAGGGCTTGGGGTCCCTTTTCTCGCGTGGTCTTTGCTTACACCTACATGGACAATATCATCATTCCCAAAGGCTGGTATAACTGGGGCGACCCTAACCGTGAAATGACTGTATTCTATGGGCAATACAAATGCACAGGACCAGGAGCAAGCTTTGCAGGGAGGGTTGCATGGTCAAGGGAACTCACCGACGAGGAAGCTAAACCATTTATTTCACTTAGCTACATTGATGGCTCTGAGTGGATCAAATCTATTTTTTGA 1158 0.4542 MSNLHSIFHVILLLLLLLLLQNPRATQCHTKAIRPRRSAGSVLPINMTQVRLSEQQFMKWVKFVGGLKHSVFGTAKNKLFPSHTLHVSKKPGKGRFSSIQAAIDSLSFINLVRVVIKVHAGVYTEKVNIPPLKSFITIQGEGADKTIVQWGDTAQTPGPKGQPLGTYGSATFAVNSPYFIAKNITFKNTTPVPAPGAVGKQAVALRISADTAIFLGCRFLGAQDTLYDHLGRHYYKDCYIEGSVDFIFGNALSLFEGCHVHAIAQNTGALTAQGRSSLLEDTGFSFVHCKVTGSGALYLGRAWGPFSRVVFAYTYMDNIIIPKGWYNWGDPNREMTVFYGQYKCTGPGASFAGRVAWSRELTDEEAKPFISLSYIDGSEWIKSIF* 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g2944 385 ProSitePatterns Pectinesterase signature 2. 240 249 IPR033131 -
Dod04g2944 385 Gene3D - 82 384 IPR012334 -
Dod04g2944 385 PANTHER PECTINESTERASE 6 383 - -
Dod04g2944 385 Pfam Pectinesterase 90 377 IPR000070 GO:0030599|GO:0042545
Dod04g2944 385 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 6 383 - -
Dod04g2944 385 SUPERFAMILY Pectin lyase-like 81 383 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g2944 Dod-Chr4 53221057 53224554 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g2944 92 381 Carbohydrate Esterase AT5G47500 49.485 1.08e-100 301
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g2944 K01051 - gmx:100802832 676.011
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod04g2944 04 53221057 53224554 Dod04g2944 04 53221057 53224554 ECH