Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g2924 ATGCCGGAGATTGTGCAAACATCGAATGCAAACAAAAACCAAGCCAAACCAAAAACCACCATGATGCTGGGGGAGCCCCACCGAGCAAATCCGACAGTCTACGTGCCACCATGGCCAACCCTCATCGACGATCCAACGCCTGAGATCTTCTCCCCTTATTCACTAAACGGCGTTTCCGTACACTCCGACTCCAATGCCGGCGACTACTCTCCCTACTATATGCATGAAGCCCTCTCGGCACTGCAGCGCTACCTCCCATCAAACGACGTCGCAGACGGCGACTCCGACTCGGAGGTTGTCCCTAACCGGGAACCGGACTCGCCGGTGGACGCTTACTCGTGCGACCACTTCCGCATGTTCGAGTTCAAGGTTAGGAGGTGCGCGCGTGGCAGGTCACACGACTGGACGGAGTGTCCGTACGCACATCCCGGCGAGAAGGCGCGCCGCCGTGACCCGAGGAAGTACCACTACTCCGGGACGGCGTGCCCCGATTTCCGCAAGGGGAGTTGCAAGAAAGGCGACGCGTGCGAGTACGCGCACGGCGTGTTCGAGTGCTGGCTTCACCCCGCGCGTTACCGTACACAGCCATGCAAGGACGGCACCAGTTGCCGGAGGAGGGTCTGTTTCTTCGCCCACACGCCGGAGCAACTCAGGGTACTGCCTCAGCACAGTCCCCGGAGCGTTGATTCCTATGACGGTTCTCCTCTGAGGCACGCGCTTGAGTCCTCCTGCGCCAAAACGCTGCCGTTTCTGTCTTCGCCGGGATCGGTTTCTCCGACGGAGGAGTCTCCCCCGATGTCGCCGGTGACTAGGTCATTGGGCCGGTCTTTGGGATCTGGGCCTGTGAATGTGAGTGAGATGGTGGTTTCTCTGCGTAATTTGCAACTTGGTAAGGTTAGTTCTTTGCCTAATTCTTGGAATGTTCAAATGGGGTCTCCTGGGTTCGGATCTCCGAGGGGACCCGTGATCCGACCCGGGTTCTGCAGCCTGCCCTCTACGCCCACCGAGGCTCCGGGTCATGGCGGTGGGAACTATTTTGATGTGTGGGATCAGGGTCGTTGCGAGGAGGAGCCTGTGATGGAGAGGGTGGAGTCTGGGAGGGACATAAGGGCCAAGATGTTTGAGAAGTTGAGCAAGGAAAACTCTCTGGGTAGATCGGGTTCGGGTTCTTCGGGTGGAGCTCCGGATGTTGGGTGGGTGTCGGAGCTGGTGGAGTGA 1218 0.5895 MPEIVQTSNANKNQAKPKTTMMLGEPHRANPTVYVPPWPTLIDDPTPEIFSPYSLNGVSVHSDSNAGDYSPYYMHEALSALQRYLPSNDVADGDSDSEVVPNREPDSPVDAYSCDHFRMFEFKVRRCARGRSHDWTECPYAHPGEKARRRDPRKYHYSGTACPDFRKGSCKKGDACEYAHGVFECWLHPARYRTQPCKDGTSCRRRVCFFAHTPEQLRVLPQHSPRSVDSYDGSPLRHALESSCAKTLPFLSSPGSVSPTEESPPMSPVTRSLGRSLGSGPVNVSEMVVSLRNLQLGKVSSLPNSWNVQMGSPGFGSPRGPVIRPGFCSLPSTPTEAPGHGGGNYFDVWDQGRCEEEPVMERVESGRDIRAKMFEKLSKENSLGRSGSGSSGGAPDVGWVSELVE* 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g2924 405 Gene3D - 156 220 - -
Dod04g2924 405 MobiDBLite consensus disorder prediction 251 278 - -
Dod04g2924 405 MobiDBLite consensus disorder prediction 379 405 - -
Dod04g2924 405 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 20 27 404 - -
Dod04g2924 405 ProSiteProfiles Zinc finger C3H1-type profile. 157 183 IPR000571 GO:0046872
Dod04g2924 405 PANTHER UNKEMPT FAMILY MEMBER 27 404 IPR045234 -
Dod04g2924 405 SMART c3hfinal6 191 214 IPR000571 GO:0046872
Dod04g2924 405 SMART c3hfinal6 156 182 IPR000571 GO:0046872
Dod04g2924 405 MobiDBLite consensus disorder prediction 1 18 - -
Dod04g2924 405 MobiDBLite consensus disorder prediction 1 29 - -
Dod04g2924 405 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 161 181 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g2924 Dod-Chr4 53013398 53016551 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g2924 105 308 C2H2 Transcription Factor Family AT5G12850 50.962 1.76e-59 203
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Dod04g2924 zf-CCCH 9.1e-06 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g2924 - - aprc:113867365 612.453
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod04g2924 04 53013398 53016551 Dod04g2924 04 53013398 53016551 ECH