Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g2888 ATGGGTGTATCACTACTTCCACTCCATCATCCTCCCACAACAACTTCCTCCTGTTTTCTCCGAACTCTTTCGCCCCCCAAATTCGCTTTATTTACGCTTCCTGCGCTCCGCCGCCACCGCGCTTCCCTCGCCGTCAGAGCCAGCACCAACGGCGGCGCTGGCAGTGGCCTTCCTCAGCCTCTGCTTCAAGTGGAGGATCTGAGGGCTAAGATCATCGAATCCGACGTGGAAATCCTTCACGGCGTTAACCTCACCGTCAACCAAGGAGAGGTCCACGCCATCATGGGAAAGAACGGTTCTGGAAAAAGCACCTTTGCCAAGGTTCTTGTCGGGCATCCGGATTACGAGGTTACAGGAGGCAGTGTTGTGTTCAAAGGGGAGAATTTGCTTGAAATGGAACCCGAGGAACGGTCCCTTGCTGGCCTTTTCATGAGTTTTCAGTCCCCTGTTGAGATTCCAGGTGTTTCTAATGATGAGTTTTTGGTCATGGCCTACAATGCTCGGAGAAGAAAGCTTGGCCTCCCTGAGCTTGGTCCACTTGAGTGTTTTTCGTACCTGATGGAGAAACTCCAACTTGTTAACATGAAGCCGGACTTTCTCAATAGGAATGTCAATGAAGGATTTAGTGGCGGTGAACGCAAACGCAATGAAATTTTACAGCTTGCGGTCTTGGGGGCAGACTTGGCTATTCTGGATGAAATTGATTCTGGATTGGATATTGATGCACTCAGAGATGTGGCGAATGCTGTCAATAGAATACTGACCCCAAAGAATTCTCTGTTGATGATAACTCATTATCGACGAATTCTTGATCTTTTAAATCCAACACATGTCCATGTTATGGACAATGGGAAGATTGCAAGGACAGGCGACATATCTATGGTAGAAGCTATTGAGGCTGACGGATATGAGACAGTCTCTGCCTTAACTTAA 933 0.4823 MGVSLLPLHHPPTTTSSCFLRTLSPPKFALFTLPALRRHRASLAVRASTNGGAGSGLPQPLLQVEDLRAKIIESDVEILHGVNLTVNQGEVHAIMGKNGSGKSTFAKVLVGHPDYEVTGGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVSNDEFLVMAYNARRRKLGLPELGPLECFSYLMEKLQLVNMKPDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDIDALRDVANAVNRILTPKNSLLMITHYRRILDLLNPTHVHVMDNGKIARTGDISMVEAIEADGYETVSALT* 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g2888 310 Pfam ABC transporter 79 233 IPR003439 GO:0005524
Dod04g2888 310 TIGRFAM sufC: FeS assembly ATPase SufC 62 305 IPR010230 GO:0005524
Dod04g2888 310 ProSitePatterns ABC transporters family signature. 208 222 IPR017871 GO:0005524
Dod04g2888 310 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 60 293 IPR027417 -
Dod04g2888 310 SMART AAA_5 88 285 IPR003593 -
Dod04g2888 310 Gene3D - 61 309 IPR027417 -
Dod04g2888 310 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 62 308 IPR003439 GO:0005524
Dod04g2888 310 CDD ABC_FeS_Assembly 62 303 IPR010230 GO:0005524
Dod04g2888 310 PANTHER ABC TRANSPORTER I FAMILY MEMBER 6, CHLOROPLASTIC 59 307 IPR010230 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g2888 Dod-Chr4 52719514 52722134 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g2888 75 302 Calmodulin-binding Proteins AT2G36910 24.066 2.63e-08 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g2888 K09013 - gmx:100811883 452.981