Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g2886 ATGGAAGGAACACATATGGAGGAGAGAGAAAATGGAGTGATCGTGCCATCGTGCAAGGTATTCTCAGCTCATGGTGCTGGTAAAAGCCTGTTTGGAATCGCCGAAGCTTCTAGAAAGATGCAACTCCAAAGAGAGAAGAAGAAGAAGAACGAGAACGCTAACGCTCGTTCATCTTCAACATACGATGTGGCCGTAACAGGGAAAGTTAGAAAAAAGAACAAACAGAAACGTATTCAGGATTTGTTCACACTACCGGACTACAGCGATAGTCCTCTTATTTGTCACCAATTTGATTCTCTTCCTTCCGGTCCCAAAAATTACACTCCTGCATATGAAGACCACGGGTTCACCAAAAGGAGGAAGGTTTCTCAGAGTGCAAGGGGAAGTCAGACTGATTGTAATAAGAAAGCAACAGTGAAGAAACATGGTATTGGCAAAGGTTTGATGACAGTTTGGAGGGCAACAAATCCTGATGCTGAAGACCTTCCAATTGGTTTTGGTTTTGCTGACCGAGAACAGGAAGTTCGTCTATTCTCGAATTCTATACAGAAACCAGTTTGTGAGAGCAAAAGGTCACGGAAAGCGGTGACCATGAATGGAATGCCAAAAAATAAAATGCAGAACAAGCGAAATAAACTACAGGATAAGAGGAAACTTTCCATGCAAAGAACAGTGGGGGAATCTAATCAATATGTGATCCAGAACCAGCCAATGAAGGAAAAATGTGAACTTGCATTGGATGGTGCAATATCTGAGGAGGGGGTTGATCGAATTTCAATGTTAATCGATGATGAAGAGCTAGAGCCGAGAGAATTAGCAGGAACCAATCTGCTGATGTGTTCTGATCATCTTACTGGCAGTGGAATGCTTGGCAGCTCACTCTGTAAAGATGCGCTAGCAAAGTTTCCCCCAGATACTGTCAAAATGAAGAAACCTATCTGTTTGCAACCTTGGGACTCCTCTCCAGAAACTGTGAAGAAATTATTTAAGGTTTTTCATTTCCTTTACACATATGCTATAGTTGTTGATATATGCCCCTTCACTCTTGATGAGTTTGTTCAAGCATTTCATGATAAGGACTCGATGTTACTTGGAAAGATTCACATGGCCCTTCTCTCACTTCTTCTGTCTGACATTGAAGTGGAGCTCACCAATGGGTTTTCACCTCATTTAAACAAGTCATGCAACTTTCTTGCATTGATTCACTCAGTTGAAAGTCAGGAATATTTGCTGGACTTCTGGAGAAGATCTCTAAACGCTCTTACTTGGGTTGAAATACTTCGTCAAGTGCTGATTGCTTCTGGATTTGGTTCCAAGCAAGGTGCCTTACGAAGAGAGGCCCTTAGCAAGGAACTGAATCTTTTTGTAAACTATGGCGTTCAACCTGGCACCGTGAAGGGAGAGTTGTTTAAAATCTTGTCAGAGCGAGGAAACAATGGATGCAAAGTATCTGAGCTAGCGAAGTCAATACAGATTATTGAATTGAACCTCGGTGGTACAACAGAGGAACTGGAGTCTTTAATATGTTCCACACTTTCAAGTGACATTACTTTATTTGAAAAGATTTCACCATCTGCATATCGTCTGCGTAGGAGCACTGTTACAAAGGGGACAGATGATTTTCAGTCAGATATGGAGGATGCTGGAAGTGTTGATGATGAACTGAGTGACAGTGATACATGTAGCAGTGATGGCGATTTTGACAAAGATTCAAGAAACTCCAATATAAGAAAGCTGACGTATGCAAACAGTCATAAGAATAAAAATAAGATGCTGAAAGTATATACTGAAATTGATGAGAGCCATCCAGGAGAAGTATGGTTGTTAGGACTGATGGAGAGTGAATATTCGGATTTGAAAATTGAAGAAAAGTTGAATGCTTTGGCGGCTCTAACTGATCTTCTTTCCTCTGGATCCAGCATCAGGATGAAGGATCCAACGAGAGCTGCGGCTGATTGCAATTCCAGCATCCAACGTGGTTCTGGAGCAAAAATAAAAAGATCACAAGGAACGAATCCTGGGTCATTTTGGAACCAGATTGGACACATGCAATGTGTTAAAGAAGTGTACTCATGTTCTCATCCCGGTCCAATGGATTCCTCATCATTACTCTCATATTTCCATAATCATGGGAAGAAGGGAAAAGGTTCAAATGATTCACATCCCATTCAATCAGTGTTTTTGGGATCTGATCGTTGGTACAATAGATACTGGCTTTTCTTGGGCCCTTGTAATGCAGATGATCCTGGCCATAGGAGGGTTTATTTTGAATCTTCCGAAGATGGTCACTGGGAGGTGATTGATACTGAAGAGGCCTTATGTGCCTTGCTGTCAGTACTGGATGATAGAGGGAAACGGGAGGCTCTTCTCATTGAATCTCTGGAGAGGCGGCAAGCATCTCTATGCAGATCTATGTCCAGAATTAAGATTAACAGTACTGGAATGGGGTGTATGTCACATTCTGATCAGTCTTCTGAGCTGGATCTGGTTACAGAAGACAGTTATTCTCCAGTATCCGATGTAGACAATCTGAATCGGATTGGGCCTACAAAAGAATCTCTACCTTCAGCTGGGGCTGTGGTAATTGAAGCTGGAAAGAAGGGTGAGGAACAAGTGCAAAAATGGATCCGTGCTCAGGGATTTGATTCTTGGATTTGGGGATCCTTTTATTTAGATCTCAATGTTGTAAAATATGGTAGAAGGTCTTATCTTGACTCTCTAGCCAGATGTCTGAGTTGTCATGATCTATACTGGAGAGATGAGAGACACTGCAAAATTTGCCATGTGACATTTGAGCTTGATTTTGATCTAGAAGAGAGATATGCAATTCACAAAGCCACATGCAGGGAGAGAGAGGATAGCAATACATTTCCAAATCATAAAGTCTTATCATCACAGATTCAATCATTGAAAGCTGCAATTCATGCTATTGAGTCTGTAATGCCTGAAGATGCCCTGGTCGGTGCTTGGAGGAAGTCTGCTCATAAGCTATGGGTCAAACGGCTCAGACGCACGTCATCTTTAGTGGAGCTTTTGCAGGTTCTATCTGATTTTGTTGGCGCGATAAATGAGGAGTGGCTGTTTCAATGCAACTTTCCGGACAGTGTGGTTGAAGAAATCATTGTATCTTTTGCATCTATGCCCCATACATCATCTGCCGTTGCTCTCTGGTTAGTAAAGTTAGATGGCGTAATTGCTCCCTTCCTGGACAGAGGCCATCCTCAGGAGCAGCAGGGAAATAATTTTCAGGTAAGCATGGTCATTGCTGACGCACCTACTTACGTCTAG 3288 0.4218 MEGTHMEERENGVIVPSCKVFSAHGAGKSLFGIAEASRKMQLQREKKKKNENANARSSSTYDVAVTGKVRKKNKQKRIQDLFTLPDYSDSPLICHQFDSLPSGPKNYTPAYEDHGFTKRRKVSQSARGSQTDCNKKATVKKHGIGKGLMTVWRATNPDAEDLPIGFGFADREQEVRLFSNSIQKPVCESKRSRKAVTMNGMPKNKMQNKRNKLQDKRKLSMQRTVGESNQYVIQNQPMKEKCELALDGAISEEGVDRISMLIDDEELEPRELAGTNLLMCSDHLTGSGMLGSSLCKDALAKFPPDTVKMKKPICLQPWDSSPETVKKLFKVFHFLYTYAIVVDICPFTLDEFVQAFHDKDSMLLGKIHMALLSLLLSDIEVELTNGFSPHLNKSCNFLALIHSVESQEYLLDFWRRSLNALTWVEILRQVLIASGFGSKQGALRREALSKELNLFVNYGVQPGTVKGELFKILSERGNNGCKVSELAKSIQIIELNLGGTTEELESLICSTLSSDITLFEKISPSAYRLRRSTVTKGTDDFQSDMEDAGSVDDELSDSDTCSSDGDFDKDSRNSNIRKLTYANSHKNKNKMLKVYTEIDESHPGEVWLLGLMESEYSDLKIEEKLNALAALTDLLSSGSSIRMKDPTRAAADCNSSIQRGSGAKIKRSQGTNPGSFWNQIGHMQCVKEVYSCSHPGPMDSSSLLSYFHNHGKKGKGSNDSHPIQSVFLGSDRWYNRYWLFLGPCNADDPGHRRVYFESSEDGHWEVIDTEEALCALLSVLDDRGKREALLIESLERRQASLCRSMSRIKINSTGMGCMSHSDQSSELDLVTEDSYSPVSDVDNLNRIGPTKESLPSAGAVVIEAGKKGEEQVQKWIRAQGFDSWIWGSFYLDLNVVKYGRRSYLDSLARCLSCHDLYWRDERHCKICHVTFELDFDLEERYAIHKATCREREDSNTFPNHKVLSSQIQSLKAAIHAIESVMPEDALVGAWRKSAHKLWVKRLRRTSSLVELLQVLSDFVGAINEEWLFQCNFPDSVVEEIIVSFASMPHTSSAVALWLVKLDGVIAPFLDRGHPQEQQGNNFQVSMVIADAPTYV* 1096
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g2886 1095 Pfam Williams-Beuren syndrome DDT (WSD), D-TOX E motif 724 797 IPR028941 -
Dod04g2886 1095 Coils Coil 33 53 - -
Dod04g2886 1095 MobiDBLite consensus disorder prediction 538 569 - -
Dod04g2886 1095 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 603 642 IPR028942 -
Dod04g2886 1095 Coils Coil 203 223 - -
Dod04g2886 1095 MobiDBLite consensus disorder prediction 545 561 - -
Dod04g2886 1095 MobiDBLite consensus disorder prediction 651 669 - -
Dod04g2886 1095 Pfam DDT domain 323 378 IPR018501 -
Dod04g2886 1095 MobiDBLite consensus disorder prediction 647 669 - -
Dod04g2886 1095 PANTHER OS07G0619600 PROTEIN 44 1078 - -
Dod04g2886 1095 PANTHER HOMEOBOX-DDT DOMAIN PROTEIN RLT2 44 1078 IPR044977 GO:0006357
Dod04g2886 1095 SMART testlast3 322 381 IPR018501 -
Dod04g2886 1095 ProSiteProfiles DDT domain profile. 322 381 IPR018501 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g2886 Dod-Chr4 52708531 52717474 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g2886 250 642 Homeobox Transcription Factor Family AT1G28420 30.261 2.49e-51 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Dod04g2886 WSD 4.2e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g2886 - - aprc:113853612 1623.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod04g2886 04 52708531 52717474 Dod04g2886 04 52708531 52717474 ECH