Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g2878 ATGGGGATTTGCTTCAGCATTGAAGAGCAAAAGCACCACTCCGTCTCCGATTCAAATCTCAAGCCTAGGCCTCCAGGGTTAGTAGGACATGAATCTTCATCGTCAACGACTCCATTAAGTTCCATGAATATCAAGGATCTGCGCGAAGGTGCTGGATACAGCAATGTTGGTATTTTCACGTACGAGGAGCTGAGGCTCGCAACGAAGCACTTTCGCCCTGACTTGATTCTCGGAGAAGGTGGCTTCGGAGTTGTGTATAAAGGTGTCATTGATGATAGTGTGAGGCCGGGTTACGAGTCCACTCAAGTCGCCATTAAGGAGCTTAATCGCGAAGGATTTCAAGGCGATAGGGAATGGCTCGCTGAAGTTAACTACTTAGGTCAGTTCAGTCACCCAAATCTTGTGAAGCTCATTGGATACTGCTGCGAGGATGACCACCGGTTATTGGTCTACGAGTATATGGCAAGTGGCAGCTTGGAGAAACATCTTTTTCGCAGAGTGGGCTCAACACTGACTTGGTCAAAAAGAATGAAGATTGCTTTACATGCCGCAAGAGGGCTTGCTTTTCTTCATGGTGCAGAAAGGCCTATCATATATCGTGATTTCAAGACATCAAATATCTTGCTAGATGCGGATTTCAATGCAAAGCTTTCAGACTTCGGTCTTGCAAAGGATGGGCCGATGGGGGACCAAACCCATGTTTCAACACGAGTGATGGGCACATATGGATATGCTGCTCCTGAGTATGTCATGACTGGGCATCTGACAGCTCGAAGTGATGTATATGGTTTTGGGGTGGTGCTGCTTGAAATGCTTATTGGTAGGAGAGCATTGGACAAGAGCAGGCCCAGCCGAGAGCATAACTTGGTTGAGTGGGCACGCCCACTATTGAATCATAATAAAAAACTACTAAAAATTTTAGACCCTAAAATGGATGGGCAATATTCAACTAAAACTGCTATAAAGGTGGCCCATTTAGCATACCAGTGTCTTAGCCAAAACCCGAAAGGCAGACCTCTCATGAGCCAGGTTGTTGAAATTCTCGAAAATTTCCAGTCAAAGGGGGGAAATGAGGAAGAAGAAATGCTTCAAAGTAGCAGTAGCGGCATAACCATTTTTGAGGCTCCAAAGGGTGGCAATGACATTCCAACTGAAAGCAAAAACCGAAGTAAAAGTGAAGAGGTTTGTAGGAGGGAAATAAGGACAGAAAGAAGCAGGAGTCAGCCTTCAATTGATCATAATTTATCCAGCTCCTCTTCAAATAACATATTGCTCCGAGATAAGTCAGCTTCTAGAAGTTGA 1302 0.4501 MGICFSIEEQKHHSVSDSNLKPRPPGLVGHESSSSTTPLSSMNIKDLREGAGYSNVGIFTYEELRLATKHFRPDLILGEGGFGVVYKGVIDDSVRPGYESTQVAIKELNREGFQGDREWLAEVNYLGQFSHPNLVKLIGYCCEDDHRLLVYEYMASGSLEKHLFRRVGSTLTWSKRMKIALHAARGLAFLHGAERPIIYRDFKTSNILLDADFNAKLSDFGLAKDGPMGDQTHVSTRVMGTYGYAAPEYVMTGHLTARSDVYGFGVVLLEMLIGRRALDKSRPSREHNLVEWARPLLNHNKKLLKILDPKMDGQYSTKTAIKVAHLAYQCLSQNPKGRPLMSQVVEILENFQSKGGNEEEEMLQSSSSGITIFEAPKGGNDIPTESKNRSKSEEVCRREIRTERSRSQPSIDHNLSSSSSNNILLRDKSASRS* 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g2878 433 Pfam Protein tyrosine and serine/threonine kinase 76 348 IPR001245 GO:0004672|GO:0006468
Dod04g2878 433 MobiDBLite consensus disorder prediction 360 433 - -
Dod04g2878 433 MobiDBLite consensus disorder prediction 384 408 - -
Dod04g2878 433 PANTHER OS01G0588500 PROTEIN-RELATED 33 396 - -
Dod04g2878 433 ProSitePatterns Serine/Threonine protein kinases active-site signature. 197 209 IPR008271 GO:0004672|GO:0006468
Dod04g2878 433 Gene3D Phosphorylase Kinase; domain 1 47 153 - -
Dod04g2878 433 CDD STKc_IRAK 77 351 - -
Dod04g2878 433 MobiDBLite consensus disorder prediction 14 41 - -
Dod04g2878 433 ProSiteProfiles Protein kinase domain profile. 71 351 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dod04g2878 433 Gene3D Transferase(Phosphotransferase) domain 1 154 374 - -
Dod04g2878 433 ProSitePatterns Protein kinases ATP-binding region signature. 77 106 IPR017441 GO:0005524
Dod04g2878 433 PANTHER SERINE/THREONINE-PROTEIN KINASE PBL17-RELATED 33 396 - -
Dod04g2878 433 SUPERFAMILY Protein kinase-like (PK-like) 53 349 IPR011009 -
Dod04g2878 433 MobiDBLite consensus disorder prediction 409 433 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g2878 Dod-Chr4 52651305 52656209 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g2878 4 348 Glycoside Hydrolase AT3G07070 45.763 1.19e-101 307
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Dod04g2878 PK_Tyr_Ser-Thr 7.4e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g2878 - - gmx:100800465 694.501