Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g2852 ATGTTAAAGAGTGTAGTGATGGGTGTTCCACAAACTCCCAACCCACCTCCACATCTGTATCCTCAGGAGCTTCAGCTTAAGCTCTACCAGGCCTTCATATTCTCAATTCCAATACTCTTTTCCATTATTCTGGTTCTACTCTTTTACTTGTTCTACCTCAAGAGGAGGGCTTCCTCTCTCTCAGCCACTCCTCTCCACATACTTCCTACCACTGCCAATCCCCAAACTGCATACCCTTATCCTTCCTCACCTTATCGTTTAGATCTGACGGTACAATTTCTGGACAAACTCCCAAGAATTTTATTTGATGAGGATTTGAGATCAGCAAGGGATTCAGTATGCTGTGTTTGTCTGGGAGAATTTGAGGTGAAAGAGGAGCTGCTGCAGATTCCATATTGCAAGCATTTGTTTCACATAGAATGCATACATAACTGGCTTCAATCAAACTCCACATGTCCACTTTGTAGATGCTCCATCATCCCCACTACCAAGTTCCTCAATCCAGCACCACCGCCTATTGCCAACTCAGACCCACCACCTCAGCAAGGTGGCATCACTTCTTCAGGCTCTCCATCATCACACATTTTACATCAACTAGATGGTGATGATGATGAATCCGGTGCTTCCTCAAACACAGCCCATTTTTCAAGGGAATGA 657 0.446 MLKSVVMGVPQTPNPPPHLYPQELQLKLYQAFIFSIPILFSIILVLLFYLFYLKRRASSLSATPLHILPTTANPQTAYPYPSSPYRLDLTVQFLDKLPRILFDEDLRSARDSVCCVCLGEFEVKEELLQIPYCKHLFHIECIHNWLQSNSTCPLCRCSIIPTTKFLNPAPPPIANSDPPPQQGGITSSGSPSSHILHQLDGDDDESGASSNTAHFSRE* 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g2852 218 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHA4A-RELATED 10 165 - -
Dod04g2852 218 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 84 161 IPR013083 -
Dod04g2852 218 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 10 165 - -
Dod04g2852 218 SMART ring_2 114 155 IPR001841 -
Dod04g2852 218 ProSiteProfiles Zinc finger RING-type profile. 114 156 IPR001841 -
Dod04g2852 218 SUPERFAMILY RING/U-box 94 165 - -
Dod04g2852 218 MobiDBLite consensus disorder prediction 179 195 - -
Dod04g2852 218 Pfam Ring finger domain 114 156 IPR001841 -
Dod04g2852 218 MobiDBLite consensus disorder prediction 168 218 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g2852 Dod-Chr4 52411451 52413872 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g2852 14 218 C3H Transcription Factor Family AT4G10150 35.023 1.09e-34 121
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g2852 K19039 - gmx:100806554 280.411
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod04g2852 04 52411451 52413872 Dod04g2852 04 52411451 52413872 ECH