Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g2841 ATGGAAGCGGAAGCAGATTTCGGGACGAATGACGATATCGATATGCTCACTCTCCCACAAGATCCCTTTGATGCCGATGCCATTGACAATGATAATGATAGTCTTGCTATTGAAGGGGAAAGATGCGGTATATGCATGGATATTGTTATTGACAGGGGAGTTCTGGATTGCTGTCAGCACTGGTTCTGCTTTGCATGCATTGACAATTGGGCTACCATCACTAATCTATGCCCACTTTGCCAGAATGAGTTTCAGTTGATCACTTGTGTTCCAGTATATGATACCATTGGAAGCAATAAAGTTGAAGATGATTCATTCTTCAGAGATGATGACTGGTCCATTGAAGGGAAGAATAACACACTGTCATTTCCCTCCTACTACATCGATGAAAATGCAGTTACTTGCTTGGCTGGTGATGGCTGCAGAATCCGAAGTGGATCGGCTACTATTGAAGGAGATTCTGGTCTTGATACATCAATTGCTTGCGATTCGTGTGATATGTGGTATCATGCCTTTTGTGTGGGATTTGATACGGAAGATACATCTGACAGTTCATGGTTATGCCCAAGATGTGTGGTTGGTGAAGTTTCTAAAGGAACAGACAATAATTCAATGGAGAAGGTAAAGATAGAATGCATCCCAGAGAGTAGTAACAATCAATGTCAGGCTGAGGATTCCTTTTCAGGAAAAGTTTCTGTGTCCATTGCTGATGCTGGAGAGACAGCTGTTGTTGTTTCAATAGTGGATGGAAATAAATGGGTTCCATCAACAAGTGAGAAAGGCCTATTGTCTCTTGAAGTTGACGAGGATAGATTGACTGAATCATGTATTTGGACGTCTGACACAACTAATCAGCAGAGCGAGACAGAGAAGATGATTATGTCACCAATCATGGAGGAACAGGAGCTGGAGTTGTCCTTATCACACAATGTACCCTGTAGCCTAACCTCTAAATCCTTGGTGCATAATGATTGTAGGGAAACTGCTCATGGTGGAAGGAGTGAACCAAGTAACCTTGATGAAGCCAAGTTACTTGATGAATCTCATGTCAAAACTAGTCCATCCAGAAATGAATCTGAAATGGGTCTTCATCTTGGTTTGTCAGTGGGCTCTTTTCTATCAGTTGATAACGTGGACAAGAATGAAATAAAAGATGAAGCAACTGATGTCCTGTGCTTGAGTCCAGATGTTTCATTGAAAGGAGATGTAACTGAAACCAATGCTCAGAAGGACAATGCCAAAGTGAGTTGTGGGAAGAGAAAGCATGCTGATTGCAGTCACAATGAAGTTCATATAAAAGTTGATGATGGAGATGTCAAGCCTGAACTTGCAGTTGAATTGTCTCAAAAGAAAATTAGAGCTGCTGGTAGTCAAATGATTAGTGCCAACGAATCAGCTGATGCTCATCTTTCAGACAATGCTAAAAAAACCCCTGCTTTGAAACATTCTCCAACAAAGGAGGTTGTCAGGCCAGATATAATGAATATAGTTAAAGGTACAAACCGAGGCTTTCCAAGGGACTTGCAGACACTAATGCATATGACAATTTATCTAAAACGAAAGAAAATATGGCTGGGTTGA 1581 0.4118 MEAEADFGTNDDIDMLTLPQDPFDADAIDNDNDSLAIEGERCGICMDIVIDRGVLDCCQHWFCFACIDNWATITNLCPLCQNEFQLITCVPVYDTIGSNKVEDDSFFRDDDWSIEGKNNTLSFPSYYIDENAVTCLAGDGCRIRSGSATIEGDSGLDTSIACDSCDMWYHAFCVGFDTEDTSDSSWLCPRCVVGEVSKGTDNNSMEKVKIECIPESSNNQCQAEDSFSGKVSVSIADAGETAVVVSIVDGNKWVPSTSEKGLLSLEVDEDRLTESCIWTSDTTNQQSETEKMIMSPIMEEQELELSLSHNVPCSLTSKSLVHNDCRETAHGGRSEPSNLDEAKLLDESHVKTSPSRNESEMGLHLGLSVGSFLSVDNVDKNEIKDEATDVLCLSPDVSLKGDVTETNAQKDNAKVSCGKRKHADCSHNEVHIKVDDGDVKPELAVELSQKKIRAAGSQMISANESADAHLSDNAKKTPALKHSPTKEVVRPDIMNIVKGTNRGFPRDLQTLMHMTIYLKRKKIWLG* 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g2841 526 ProSiteProfiles Zinc finger PHD-type profile. 74 194 IPR019787 -
Dod04g2841 526 Pfam PHD-finger 157 192 IPR019787 -
Dod04g2841 526 PANTHER RING/U-BOX PROTEIN 112 502 - -
Dod04g2841 526 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 24 118 IPR013083 -
Dod04g2841 526 Pfam Ring finger domain 41 81 IPR001841 -
Dod04g2841 526 PANTHER RING FINGER PROTEIN 41, 151 112 502 - -
Dod04g2841 526 SUPERFAMILY FYVE/PHD zinc finger 154 196 IPR011011 -
Dod04g2841 526 ProSitePatterns Zinc finger RING-type signature. 58 67 IPR017907 -
Dod04g2841 526 SMART PHD_3 134 192 IPR001965 -
Dod04g2841 526 SUPERFAMILY RING/U-box 34 87 - -
Dod04g2841 526 ProSiteProfiles Zinc finger RING-type profile. 42 81 IPR001841 -
Dod04g2841 526 SMART ring_2 42 80 IPR001841 -
Dod04g2841 526 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 138 192 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g2841 Dod-Chr4 52341513 52346547 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g2841 36 84 C3H Transcription Factor Family AT2G39100 36.538 6.13e-08 52.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Dod04g2841 PHD 2.1e-09 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g2841 - - adu:107479708 771.926