Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g2828 ATGGCTTGCTTGGCCCACTTCTGTTTATTCGCTGTCTTTGTTTTCCATGACCTATTTCAAAGCACAAGAAGCGAAGAAAGGGTTTGCGATGGCATGTCATGCGGTGATAATGGAGATATTCAGTTTCCATTCAGTTTGAAAGGATCCAACCAAGACCGCGAGTGTAGCTATTACCCGGACCCCAGCTTCATACTTTCCTGCAACAACCTTAGCCAAACAATCCTCACCCTCCCAAACTCGGGGGACTTAATCATCAAAAGCATCGATTACGAGGAACAAGTCATACGAGTCAACGACCCCGATGGATGCCTCCCAAAGCGGTTCTTGAACAAGAACTGGAACCTCTCAGGTTCGCCATTCAGGTTGAACCCCACTGTTTACGATTCCCTTAACCTCACCTTCCTTAGTTGCCCCTCTAACTGGACCAAGTCATCTGGGTTGCCATCAATTTCTTGCCTGAACGCGAACGATTACCCGAACAGCCACAAAGGAAACTTCTCCAACTCTTCCTCCTCCTCGTCGGTTGTAGCTTCATGGTCGCGTCCTATTGAGTCATCAACGTTGTTTGAAGGGTGCGACGTGATTTCGAGGGCTCCTGTCCCCATCCCTGTGGCGGACATGCCTGAGTGGCCCTTCTGGCGTGATCTCACGGCTGATATTGAGTTGGAGTGGACCGAACCAAGATGTTGGGAGTGTGCAGTTAGTGGCCAAGTTTGTGGATTCGATAAGGATCATAAAAGTAGTCAAGTTGGATGCTTATCCAGCCCCCGCACCAAAAGCCAAGGTCTTCCAAGAAGTGCCAAATACGGGTTAATCCTAGGAGTGGGAGTACCTGGGCTCTTGTCTTTAATTGGGCTTGCTTGCTTCATCTGCGGCAAGGCCAAGGTCAACATACATCGGCGACGGCCCAGCATAGAGCTTCCTACAACAGTTACATTGCAGCCCATCCCCCTGGCAATAGGGCTTGATGGCGCCACAATTGAGAAGTATCCCAAGACTCTTCTTGGCGAGAGTGGGCGCTTGTTGAAGCCCAGTGACAATACCTGCTCAATATGCCTCTCCGAATATCAACCTAAAGAGACATTGAGGACCATACCTGAGTGCAACCATTATTTTCATGCTGACTGCATAGATGAGTGGCTCAGAATGAATGGCACGTGCCCCTTATGCAGGAATACACCGGGGGCGTCATCTAGAGTTACCCCTTCTTTCTCTTCTTTGTCCCCCACTTCTTCATTGTCCTCAACGTCGTAG 1254 0.496 MACLAHFCLFAVFVFHDLFQSTRSEERVCDGMSCGDNGDIQFPFSLKGSNQDRECSYYPDPSFILSCNNLSQTILTLPNSGDLIIKSIDYEEQVIRVNDPDGCLPKRFLNKNWNLSGSPFRLNPTVYDSLNLTFLSCPSNWTKSSGLPSISCLNANDYPNSHKGNFSNSSSSSSVVASWSRPIESSTLFEGCDVISRAPVPIPVADMPEWPFWRDLTADIELEWTEPRCWECAVSGQVCGFDKDHKSSQVGCLSSPRTKSQGLPRSAKYGLILGVGVPGLLSLIGLACFICGKAKVNIHRRRPSIELPTTVTLQPIPLAIGLDGATIEKYPKTLLGESGRLLKPSDNTCSICLSEYQPKETLRTIPECNHYFHADCIDEWLRMNGTCPLCRNTPGASSRVTPSFSSLSPTSSLSSTS* 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g2828 417 ProSiteProfiles Zinc finger RING-type profile. 349 391 IPR001841 -
Dod04g2828 417 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 319 395 IPR013083 -
Dod04g2828 417 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 4 417 - -
Dod04g2828 417 Pfam Ring finger domain 347 391 IPR001841 -
Dod04g2828 417 SMART ring_2 349 390 IPR001841 -
Dod04g2828 417 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 4 417 - -
Dod04g2828 417 SUPERFAMILY RING/U-box 342 394 - -
Dod04g2828 417 MobiDBLite consensus disorder prediction 395 417 - -
Dod04g2828 417 CDD RING-H2_PA-TM-RING 348 391 - -
Dod04g2828 417 Pfam Wall-associated receptor kinase galacturonan-binding 29 99 IPR025287 GO:0030247
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g2828 Dod-Chr4 52276497 52279582 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g2828 24 394 C3H Transcription Factor Family AT2G25410 36.053 2.33e-52 177
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g2828 - - gmx:100810240 463.381