Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g2827 ATGGCTACCTCGCCATCCTTCATTTTCTTGCTCAACATCAATTTCCTTCTTCTCTTGGTGGCGCACGCAACAAGAACACTTGCTCAGTTCAGCTGTGAGAGCACGTCATGCGAAAGCGGTGGGCTTTCCATCCAGTTCCCGTTCTGGTTGAGACTACCCTATCAAAGCCGCCCTTGGTGCGGTTACCCAGGGTTCGAGCTCTCGTGCACCAATACAACAGGATTCAGCGAACCACTGGTGACTCTCCCAGAATCAGGGGATTTCGTGGTCAAAGTCATATCATTGGAGGACCAAGTGGTTTGGATCAACGACCCAGAAGAGTGCCTCCCCAATCGCATCATGCGTAACCGTGGCTTCAACCTCGAACGTTCACCGTTCCGATTCAGCACTGATTATAATCAGATGAATTACTCCTTCCTCAGCTGCCCCTCCAATTTAACCGCTTTCTCTATGGTTCAGCCAATAAGTTGTTTGGAATCGAGCTTTAATCGTGATAAGAACAGCAGCGACAACCTTAACTATTCGGTGGTGGCTGTGTTGTCGGATCCCCCGATTCCAACACCATGGACGGCACCGTGCCACGTGATCTCGTGGGCTCTGATCCCTGTGGCGGGTATGCCTTGGCTGTTTTGGAGCGATTACTATTCTGACATCAAGTTGCAGTGGGAAAATCCTAAGTGTGGAAGTTGCGCAGCACGTGGAGGACGATGTGGGTTCCTTGAACCAAGGTTTGAAGACACTTCTTTTCATATTGGTTGTTATGATTTTCCCAGCCAAGTTCAAGGTCTTTCAAGGAAAGTCAAATACGGCCTGGGGATTGGACTGGGAGTACCTGGTCTTCTATTTGTCATTGGGCTTATATATGTTTTCTACAGAAAGAAGCAGAGGCGTGAGCAACAGCACCGATCAAGGAGTGGGTTTGCCACCTTAAGTTTGGCGCGTCATCCTGGTGTCAGGATAGGCCTTGATATGGCTAGTATAGAAAGATATCCCAAAACCCTGCTTGGTGAAAGTGGACGCCTGCCCAAGCCCAATGATAATGTTTGCTCCATATGTCTTTGTGAGTACCAGCCCAAGGAGACGTTAAGGACCATTCCAGAGTGCAATCACTATTTCCATGCCAATTGCGTTGATGGATGGCTCAGGATGAATGCAACGTGCCCCTTGTGTCGCAATTTACCGGACAGATCCTTTTCATTTGTCCCGTCTATTCATGCATGA 1221 0.4881 MATSPSFIFLLNINFLLLLVAHATRTLAQFSCESTSCESGGLSIQFPFWLRLPYQSRPWCGYPGFELSCTNTTGFSEPLVTLPESGDFVVKVISLEDQVVWINDPEECLPNRIMRNRGFNLERSPFRFSTDYNQMNYSFLSCPSNLTAFSMVQPISCLESSFNRDKNSSDNLNYSVVAVLSDPPIPTPWTAPCHVISWALIPVAGMPWLFWSDYYSDIKLQWENPKCGSCAARGGRCGFLEPRFEDTSFHIGCYDFPSQVQGLSRKVKYGLGIGLGVPGLLFVIGLIYVFYRKKQRREQQHRSRSGFATLSLARHPGVRIGLDMASIERYPKTLLGESGRLPKPNDNVCSICLCEYQPKETLRTIPECNHYFHANCVDGWLRMNATCPLCRNLPDRSFSFVPSIHA* 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g2827 406 SUPERFAMILY RING/U-box 344 394 - -
Dod04g2827 406 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 314 395 IPR013083 -
Dod04g2827 406 SMART ring_2 349 390 IPR001841 -
Dod04g2827 406 ProSiteProfiles Zinc finger RING-type profile. 349 391 IPR001841 -
Dod04g2827 406 CDD RING-H2_PA-TM-RING 348 391 - -
Dod04g2827 406 Pfam Ring finger domain 348 391 IPR001841 -
Dod04g2827 406 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 15 404 - -
Dod04g2827 406 Pfam Wall-associated receptor kinase galacturonan-binding 32 104 IPR025287 GO:0030247
Dod04g2827 406 PANTHER RING-H2 FINGER PROTEIN ATL20-LIKE 15 404 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g2827 Dod-Chr4 52273615 52275963 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g2827 32 394 C3H Transcription Factor Family AT2G46495 32.791 9.90e-51 172