LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dod04g2821	ATGAGTTCCGAAGGTGCAAATGAAGATTGCCTAGGATGGGCAGCAAGGGATGCATCTGGAGTTCTGTCACCTTACAAATTCAGCCGCAGGGCTCTAGGAAATGGGGATGTTTACATCAAAATTACACACTGCGGTGTTTGTTATGCTGATGTAATTTGGACAAGGAATGAACATGGCGACTCAAAGTATCCTGTAGTGCCTGGGCATGAGGTTGCAGGCATTGTGACAAAGGTTGGTTCCAATGTCAACCGTTTCAATGTTGGTGACCATGTTGGAGTGGGGACTTATGTCAACTCATGCCGGGACTGTGAGTATTGCAATGACAGACTGGAAGTTCAATGTAACAAGGCATTTGTTCTTACTTTTAATAGTGTGGATATTGATGGTACAATCACAAAAGGAGGATACTCCAGTTACATAGTAGTCCATGAAAGTTATCCACTGGCTTCAGCAGCTCCTTTGCTTTGTGCTGGAATCACTGTTTATTCTCCAATGATGCGCCACAAGATGAATCAACCTGGTAAATCTCTAGGAGTGATTGGTCTTGGAGGCCTTGGTCATATGGCAGTGAAATTTGGAAAGGCATTTGGGTTGACTGTAACAGTCTTCAGCACTAGCATATCCAAGAAAGAGGAAGCCCTGACTCTGCTTGGTGCAGACAATTTTGTTGTTTCATCCGATAAAGAGCAGATGACAGCCTTGGCTAAGTCGTTAGACTTTATAATTGACACAGCATCTGGTGATCACCCATTTGACTTGTACTTGCCACTGTTGAAGACTTTTGGTGTTTTAGTCCTAGTTGGGGCCCCAAGTGAAGTCAAATTCAACCCTGTAAACCTTATATTAGGAATGAGGACCGTCTCTGGAAGTGTTACAGGAGGCACAAAAGAGATACAGGAGATGATTGACTTCTGTGCTGCAAAGGGTATTCACCCAAATATAGAAGTGATTCCAATTCAGTATGCGAATGAAGCTCTTGAGAGGCTCATAAATAGGGACGTGAAGTATCGGTTTGTGATAGATATTGAGAACTCCCTAAAATGA	1044	0.432	MSSEGANEDCLGWAARDASGVLSPYKFSRRALGNGDVYIKITHCGVCYADVIWTRNEHGDSKYPVVPGHEVAGIVTKVGSNVNRFNVGDHVGVGTYVNSCRDCEYCNDRLEVQCNKAFVLTFNSVDIDGTITKGGYSSYIVVHESYPLASAAPLLCAGITVYSPMMRHKMNQPGKSLGVIGLGGLGHMAVKFGKAFGLTVTVFSTSISKKEEALTLLGADNFVVSSDKEQMTALAKSLDFIIDTASGDHPFDLYLPLLKTFGVLVLVGAPSEVKFNPVNLILGMRTVSGSVTGGTKEIQEMIDFCAAKGIHPNIEVIPIQYANEALERLINRDVKYRFVIDIENSLK*	348

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dod04g2821	347	Gene3D	-	157	312	-	-
	Dod04g2821	347	SUPERFAMILY	GroES-like	16	175	IPR011032	-
	Dod04g2821	347	SUPERFAMILY	NAD(P)-binding Rossmann-fold domains	147	310	IPR036291	-
	Dod04g2821	347	Gene3D	-	13	342	-	-
	Dod04g2821	347	PANTHER	-	2	346	-	-
	Dod04g2821	347	Pfam	Zinc-binding dehydrogenase	184	306	IPR013149	-
	Dod04g2821	347	PANTHER	ALDEHYDE REDUCTASE	2	346	-	-
	Dod04g2821	347	SMART	PKS_ER_names_mod	20	340	IPR020843	GO:0016491
	Dod04g2821	347	ProSitePatterns	D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature.	177	204	IPR029752	-
	Dod04g2821	347	ProSitePatterns	Zinc-containing alcohol dehydrogenases signature.	68	82	IPR002328	GO:0008270\|GO:0016491

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Dod04g2821	Dod-Chr4	52243496	52245316	Dispersed/Transposed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dod04g2821	2	347	Monolignol Biosynthesis Gene Families	AT1G72680	72.599	0.0	514

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Dod04g2821	K00083		-	gmx:100807617	604.749

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