Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g2809 ATGGAGGAAATGAAAGAAAGAAATGCAGGGCCTGATATTGGGTCGTGTTTATCAAATCTCATTCTATCAGGCGGGGCAAACACCTTGGACTCAATTTTCTCTCATCGCCCCACAACAAATGCTGCTACCACCACCACTATGCTGGAGCCTTTGGCTTTGGGGTCCTCCGTGTACCTTCGCCAAAGAGACATCCTCCAAAAGCTCTTCGAGGAGAGCAAGGTTAATGGCTCTTTTGTTCCTAGTCCCTCAAAGAGTATCCCATTGTGCACGAGCCCTTGCAAAAAGAAGAAGCTGTACAGGGGAGTGAGGCAGAGGAACTGGGGAAAATGGGTGGCAGAGATAAGACTCCCTCAGAACAGAATGAGGGTCTGGCTCGGCACTTACGACACTCCTGAAGCCGCTGCATATGCCTACGATCGTGCCTCTTACAAGCTCCGAGGCGAATACGCGCGTTTGAATTTCCCAACCCTCAAGGAAGTAGTGGAACCCTGCAGCAGTAACCTGTTAGTTTCCCATGACTCTGCAAAGTTGAACGCTTTGAGGAGCTACGTGGACGCCAAGATTCAAGCTATATGTCAAAAGGTTAAGAGAGACAAAGCCAGCAAGAAGAAGAGCAGTGCTGCGAAGAAGGTTCATTGTGGTGCTAATAAAATGAAACCCAATGAACTGAGTGATGAGAAACCACGCAGTAATGTAGAGTCATCGTGTTGTTCTTCTTGGTCTTCGTTACAGCTGTCGCCAACAGTTTTTTGCGACAGTCGAAGCGAGTTTGTTTCACCGAGCTCTGTTTCAACAGGGTGTGCGACATTGGCAACAGAGGAATCGGATTTCGAAGACTGTTCCCTGGAAAGGTTGCCTTCCTTTGATCCCGAGTTGATTTGGGAATTTCTGACCAATTAG 900 0.4811 MEEMKERNAGPDIGSCLSNLILSGGANTLDSIFSHRPTTNAATTTTMLEPLALGSSVYLRQRDILQKLFEESKVNGSFVPSPSKSIPLCTSPCKKKKLYRGVRQRNWGKWVAEIRLPQNRMRVWLGTYDTPEAAAYAYDRASYKLRGEYARLNFPTLKEVVEPCSSNLLVSHDSAKLNALRSYVDAKIQAICQKVKRDKASKKKSSAAKKVHCGANKMKPNELSDEKPRSNVESSCCSSWSSLQLSPTVFCDSRSEFVSPSSVSTGCATLATEESDFEDCSLERLPSFDPELIWEFLTN* 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g2809 299 ProSiteProfiles AP2/ERF domain profile. 98 155 IPR001471 GO:0003700|GO:0006355
Dod04g2809 299 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 9 299 - -
Dod04g2809 299 SUPERFAMILY DNA-binding domain 98 156 IPR016177 GO:0003677
Dod04g2809 299 Pfam AP2 domain 99 147 IPR001471 GO:0003700|GO:0006355
Dod04g2809 299 Gene3D AP2/ERF domain 98 157 IPR036955 GO:0003700|GO:0006355
Dod04g2809 299 SMART rav1_2 98 161 IPR001471 GO:0003700|GO:0006355
Dod04g2809 299 PRINTS Ethylene responsive element binding protein signature 99 110 IPR001471 GO:0003700|GO:0006355
Dod04g2809 299 PRINTS Ethylene responsive element binding protein signature 121 137 IPR001471 GO:0003700|GO:0006355
Dod04g2809 299 CDD AP2 97 155 IPR001471 GO:0003700|GO:0006355
Dod04g2809 299 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 9 299 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g2809 Dod-Chr4 52114094 52115907 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g2809 12 299 AP2-EREBP Transcription Factor Family AT1G64380 44.910 9.95e-59 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Dod04g2809 AP2 3.8e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g2809 - - gmx:100785364 282.337
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod04g2809 04 52114094 52115907 Dod04g2809 04 52114094 52115907 ECH