Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g2801 ATGGCTGACACAGTTGCAGAAGGGCCCACAAAGAGGTCAAGAAGCAAAAGGGCACTCAAGGACAAAAACTCATCAACAGCAAATGAGGCCAGCAACAACATGGCTTCTGCCAAGGTCACAGAATCCACACCACCGGTTTCCGATGACGTGGCCAAGGAGAACCATGGCACCACCACCATCCTTTCTCAGCCCAAGAAGGGAGGAGGAAGAGGTGCCTCAAAGAAACAACAGAACACCAAGCAGCAGCAGGAGCAAACTTCTTTTGAGAAAGACTTGCTTGAGATGCAGGAGAAGCTGCAGCAGCTGCGCCTCGAGAAGGAGAAGACCGAGGAGCTCTTGAAGGCCAAAGATGAGGCCCTCAAGCAGAAGGATGAGGAGCAGGAGAAGCTTCAGATGGAGCTCAAGAAACTCCAGAAGTTGAAGGAGTTCAAACCCACCATGACTTTGCCTGTGCTGAAAGACAAGGAACAAGAAAAGAAGGAGAAGAAGAAGAACGGGGGCCCTGAGAAGAAGAGGCCTTCTCCTCCTTACATTTTATGGTGCAAAGATCAATGGAATGAGATTAAGAAAGCGAACCCAGAGGCAGAGTTTAAGGACATTTCAAACATGTTGGGGGCTAAATGGAAGACAGTAAGCGCAGAAGAGAAGAAGCCGTATGAGGAGAAGTACCATGCTGAAAAAGAGGCTTATCTTCAGGTGATAGCAAAGGAGAAGCGTGAGAGTGAGGCAATGAAGCTGTTGGAAGAGGAGCAGAAGCAGAAGATTGCCATGGAACTGCTTGATCAGTATATGCAGTTCAAACAAGAGACAGAAAAAGAGACCAAGAAGAGCAAAAAAGAGAAGGATCCATTGAAACCAAAGCACCCTATGTCAGCTTATATCTTGTTCACAAACGTGAGGCGTGCAGCTCTTGTTGCAGAGAACAAGAGTGTGGTCGAGGTTGCTAAGATCACAGGCGAAGAGTGGAAAAACATGACAGAACAACAAAAGAGGCCTTATGAAGAGATGGCAAAGAAGAACAAGGAGCAATATGTCCAAGAAATGGAAGCTTACAAACAGAAGAAAGATGAGGAGGCTGCCCATCTCATGAAGGAGGAGGAGGAGCATATGAAGCTTCAGAAACAGGAAGCCTTGCAACTGCTCAAGAAGAAGGAGAAAACTGAAAATCTCATCAAGAAAACAAAAATGAATCGCCAGAAGAAGAAGCAAAACAAGGAAGACAAAAATTCTGATCCAAACAAGCCCAGGAGACCTCCATCCTCATACCTCCTATTCAGCAAAGAAGCAAGGAAAGGTTTGCAAGAGGAACGACCAGGAATCAATACCTCCACCCTTATTGCACTTATTTCTTTGAAGTGGAAGGAACTGAGTGAGGAAGATAGACAATTGTGGAATAGCAAAGCTGCTGAAGCAATGGAAACATACAAGAAGGAATTGGAGGAATACAACAAATCACTTGCTGCAGCAGCTGCAAGCCAGGATCAGGAAAAACTTGAAGAATGTTGA 1506 0.4575 MADTVAEGPTKRSRSKRALKDKNSSTANEASNNMASAKVTESTPPVSDDVAKENHGTTTILSQPKKGGGRGASKKQQNTKQQQEQTSFEKDLLEMQEKLQQLRLEKEKTEELLKAKDEALKQKDEEQEKLQMELKKLQKLKEFKPTMTLPVLKDKEQEKKEKKKNGGPEKKRPSPPYILWCKDQWNEIKKANPEAEFKDISNMLGAKWKTVSAEEKKPYEEKYHAEKEAYLQVIAKEKRESEAMKLLEEEQKQKIAMELLDQYMQFKQETEKETKKSKKEKDPLKPKHPMSAYILFTNVRRAALVAENKSVVEVAKITGEEWKNMTEQQKRPYEEMAKKNKEQYVQEMEAYKQKKDEEAAHLMKEEEEHMKLQKQEALQLLKKKEKTENLIKKTKMNRQKKKQNKEDKNSDPNKPRRPPSSYLLFSKEARKGLQEERPGINTSTLIALISLKWKELSEEDRQLWNSKAAEAMETYKKELEEYNKSLAAAAASQDQEKLEEC* 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g2801 501 PANTHER HIGH MOBILITY GROUP B PROTEIN 13 8 492 IPR044601 GO:0003677
Dod04g2801 501 Gene3D High mobility group box domain 395 497 IPR036910 -
Dod04g2801 501 Gene3D High mobility group box domain 153 258 IPR036910 -
Dod04g2801 501 Gene3D High mobility group box domain 269 367 IPR036910 -
Dod04g2801 501 SUPERFAMILY HMG-box 410 486 IPR036910 -
Dod04g2801 501 MobiDBLite consensus disorder prediction 145 177 - -
Dod04g2801 501 MobiDBLite consensus disorder prediction 24 43 - -
Dod04g2801 501 SMART hmgende2 169 239 IPR009071 -
Dod04g2801 501 SMART hmgende2 414 484 IPR009071 -
Dod04g2801 501 SMART hmgende2 285 353 IPR009071 -
Dod04g2801 501 MobiDBLite consensus disorder prediction 349 436 - -
Dod04g2801 501 PANTHER HIGH MOBILITY GROUP B PROTEIN 13 8 492 - -
Dod04g2801 501 MobiDBLite consensus disorder prediction 145 170 - -
Dod04g2801 501 Coils Coil 465 492 - -
Dod04g2801 501 CDD HMGB-UBF_HMG-box 171 235 - -
Dod04g2801 501 MobiDBLite consensus disorder prediction 72 89 - -
Dod04g2801 501 Coils Coil 334 404 - -
Dod04g2801 501 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 286 352 IPR009071 -
Dod04g2801 501 Pfam HMG (high mobility group) box 286 352 IPR009071 -
Dod04g2801 501 Pfam HMG (high mobility group) box 415 483 IPR009071 -
Dod04g2801 501 Pfam HMG (high mobility group) box 171 232 IPR009071 -
Dod04g2801 501 MobiDBLite consensus disorder prediction 349 414 - -
Dod04g2801 501 MobiDBLite consensus disorder prediction 9 23 - -
Dod04g2801 501 SUPERFAMILY HMG-box 273 358 IPR036910 -
Dod04g2801 501 MobiDBLite consensus disorder prediction 266 287 - -
Dod04g2801 501 CDD HMGB-UBF_HMG-box 286 349 - -
Dod04g2801 501 Coils Coil 85 143 - -
Dod04g2801 501 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 415 483 IPR009071 -
Dod04g2801 501 SUPERFAMILY HMG-box 159 233 IPR036910 -
Dod04g2801 501 CDD HMGB-UBF_HMG-box 415 480 - -
Dod04g2801 501 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 170 238 IPR009071 -
Dod04g2801 501 MobiDBLite consensus disorder prediction 1 93 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Dod04g2801 HMG_box 4e-15 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g2801 K09273 - gmx:100783033 513.072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod04g2801 04 52058736 52061488 Dod04g2801 04 52058736 52061488 ECH