Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g2790 ATGGCTGCGCCTTATTCAATCAAGCATACTCATCACCTCAACCACACCAAGCTTTTCACCAAAGAACAAGACCAAATGAAGCATCCCTTTCCGAGACTCATACGAATACGTGTCAGCGACGGCGACGCCACCGACTCCTCCAGCGACGAGGAAGAACAAGCCTTTGAGTACTCCTTCACGCGCCGCCGAGTCAAGAAATTCGTCAACGAGATCACTATTGACCCTATCAACAGCAACACTGAAGGAGGCGTTTCCAAGAAGAGGAGGAGGCCCAAGTGCGCCGGCGCCAGAGCTCCGGCGAGGCGGCGGCAGGGGAAGGTTATCTCCGGGAAGAAGTTCCGGGGAGTGAGGCAGAGGCCGTGGGGGAAGTGGGCGGCGGAGATAAGGGACCCTTCGCGGCGCGTGAGGCTGTGGCTGGGAACCTACGACACCGCCGAAGAAGCCGCCATGGTGTACGACAACGCCGCCATTCAGCTGCGCGGCGCCGACGCATTCACCAATTTCATTTCGCCGCCGCAGTCTCGGCAGGAGAACAAAAAGTCCGGGTACAATTCCGGCGAAGAGTCTCGAAACAACAGCAACAGCAACAACAACAATAACAACTTGTTGTTCTCTCCCACTTCGGTCCTCCAGTGTTGTTCGTTGTCGGAGGAAGCTGAATCCGTAACCGCCACAAGAGACGATGTTGCTGATCGAGCGAGTGAATGTGAATATTCGTGCGAGTCAATGTTTCCGATTCCAAATATCGGCGACATGCTATTTGAGTTCGAAACAGAGGATGTGTTTGACATTAACAACGTTAGTGTACCAGAGAGCATCTTGTTCACCGATGATTTCCCTGATGGTGTCTTTCTCACTTCTAGCGAGGATCTGGATTTCGGATTCACGAGTGATAGTTGGCATAGAGACCATGACAGTTTCCAAGATATTGGAGATCTGTTTGTTTCGGATCCTCTTGTAGCTCTTTGA 969 0.5253 MAAPYSIKHTHHLNHTKLFTKEQDQMKHPFPRLIRIRVSDGDATDSSSDEEEQAFEYSFTRRRVKKFVNEITIDPINSNTEGGVSKKRRRPKCAGARAPARRRQGKVISGKKFRGVRQRPWGKWAAEIRDPSRRVRLWLGTYDTAEEAAMVYDNAAIQLRGADAFTNFISPPQSRQENKKSGYNSGEESRNNSNSNNNNNNLLFSPTSVLQCCSLSEEAESVTATRDDVADRASECEYSCESMFPIPNIGDMLFEFETEDVFDINNVSVPESILFTDDFPDGVFLTSSEDLDFGFTSDSWHRDHDSFQDIGDLFVSDPLVAL* 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g2790 322 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 6 318 - -
Dod04g2790 322 Pfam AP2 domain 112 161 IPR001471 GO:0003700|GO:0006355
Dod04g2790 322 Gene3D AP2/ERF domain 111 170 IPR036955 GO:0003700|GO:0006355
Dod04g2790 322 SUPERFAMILY DNA-binding domain 112 168 IPR016177 GO:0003677
Dod04g2790 322 ProSiteProfiles AP2/ERF domain profile. 112 169 IPR001471 GO:0003700|GO:0006355
Dod04g2790 322 SMART rav1_2 112 177 IPR001471 GO:0003700|GO:0006355
Dod04g2790 322 MobiDBLite consensus disorder prediction 167 200 - -
Dod04g2790 322 MobiDBLite consensus disorder prediction 89 106 - -
Dod04g2790 322 PRINTS Ethylene responsive element binding protein signature 113 124 IPR001471 GO:0003700|GO:0006355
Dod04g2790 322 PRINTS Ethylene responsive element binding protein signature 135 151 IPR001471 GO:0003700|GO:0006355
Dod04g2790 322 CDD AP2 111 168 IPR001471 GO:0003700|GO:0006355
Dod04g2790 322 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR CRF2 6 318 - -
Dod04g2790 322 MobiDBLite consensus disorder prediction 79 106 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g2790 Dod-Chr4 51981236 51982721 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g2790 7 322 AP2-EREBP Transcription Factor Family AT4G23750 40.698 2.90e-55 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Dod04g2790 AP2 5.2e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g2790 - - gmx:100776453 296.589
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod04g2790 04 51981236 51982721 Dod04g2790 04 51981236 51982721 ECH
Dod02g1148 02 14260140 14261848 Dod04g2790 04 51981236 51982721 PCT