Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g2729 ATGGATGGGAGAGAAGCTATGGCATTCTCTGGTGGGTCAGCTTCATACTACATGCATAGGGGAGGGGTTGGTGGTTCTGGAACACAGACAGGAGGGTTCCAAGGACCCCCTGGATTCAGAGCTTTGTCAAACTCTGGCATTCAAACTCAGCAAAATAATGCAAGAGGTGGCTCTATTGCTTCTGTTGCTTCATTTTCAGTGGAGCTTCATTCACAGGATCGTGCCAATTTTAGTCATCATGGAATTAGCATTGGTGCCTCTTCTGGTTCTGGAGTGCCTTCTTCCTCTTCAGGTGAGCCTGTGAAGAAGAAGAGAGGGAGACCCCGTAAGTATGCTCCCGATGGACCAGTCTCCTTGCGACTCTCTCCAATGTCTGCTACTGCTAATTCTACCCCGGGTTCAACCACACCTTCCAACAAACGGGGTAGAGGGCGCCCACCTGGATCTGGAAGGAAGCAACAGCTAGCTACTCTAGGTGAATGGATGAACAGTTCTGCAGGGCAGGCTTTCTCACCTCATGTCATCACCATTGGAGTTGGAGAGGACATTGTAGCAAAGCTATTGTCACTATCACAGCAGAGACCAAGGGCTCTTTGCATCTTGTCAGGCACTGGGACAGTTTCTTCAGTTACTTTGCGACAGCCTGCTTCTACCGATGCCAGTGTAACTTTTGAGGGCCGATTCCATATATTATGCTTATCTGGTTCTTACTTGGTTGCTGATGATGGTGGACCCTCTAATAGGACTGGTGGCATAAGTGTTTCCCTTTCTAGCCCTGATGGTCATGTTATTGGTGGTGGTGTTGCTGTGCTTATTGCTGGAAGCCCGGTGCAGGTGGTAGTGTGCAGTTTTGTGTATGGTGGCTCTAAGACCAAGCCTAAGCAAGGCAGTTCTACCAAAGATGAAAGTTCTGAGCCTCAGCATAGTGACAAGTTAGCTTCCCCAGACAGTGCTCCTCCTAGTCAAAACTACATCCCTTCCGCCGCAGGCATTTGGCCTGGATCACGACCACCACCAGAGCTAAAAAGCGTTCACATACACACCGGCATTGACTTGACCCGCGGGTGA 1068 0.4972 MDGREAMAFSGGSASYYMHRGGVGGSGTQTGGFQGPPGFRALSNSGIQTQQNNARGGSIASVASFSVELHSQDRANFSHHGISIGASSGSGVPSSSSGEPVKKKRGRPRKYAPDGPVSLRLSPMSATANSTPGSTTPSNKRGRGRPPGSGRKQQLATLGEWMNSSAGQAFSPHVITIGVGEDIVAKLLSLSQQRPRALCILSGTGTVSSVTLRQPASTDASVTFEGRFHILCLSGSYLVADDGGPSNRTGGISVSLSSPDGHVIGGGVAVLIAGSPVQVVVCSFVYGGSKTKPKQGSSTKDESSEPQHSDKLASPDSAPPSQNYIPSAAGIWPGSRPPPELKSVHIHTGIDLTRG* 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g2729 355 MobiDBLite consensus disorder prediction 310 324 - -
Dod04g2729 355 Gene3D - 172 301 - -
Dod04g2729 355 PANTHER AT HOOK MOTIF DNA-BINDING FAMILY PROTEIN 1 355 - -
Dod04g2729 355 MobiDBLite consensus disorder prediction 79 97 - -
Dod04g2729 355 Pfam Plants and Prokaryotes Conserved (PCC) domain 172 285 IPR005175 -
Dod04g2729 355 ProSiteProfiles PPC domain profile profile. 167 307 IPR005175 -
Dod04g2729 355 MobiDBLite consensus disorder prediction 295 309 - -
Dod04g2729 355 MobiDBLite consensus disorder prediction 290 355 - -
Dod04g2729 355 MobiDBLite consensus disorder prediction 122 142 - -
Dod04g2729 355 SMART AT_hook_2 102 114 IPR017956 GO:0003677
Dod04g2729 355 SMART AT_hook_2 140 152 IPR017956 GO:0003677
Dod04g2729 355 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 1 355 IPR039605 GO:0003680
Dod04g2729 355 CDD DUF296 172 284 IPR005175 -
Dod04g2729 355 MobiDBLite consensus disorder prediction 79 153 - -
Dod04g2729 355 SUPERFAMILY AF0104/ALDC/Ptd012-like 168 289 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g2729 Dod-Chr4 51231468 51235128 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g2729 1 355 AT-hook Motif Nuclear Localized (AHL) Family AT1G63470 49.871 8.60e-96 288
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g2729 - - gmx:100798706 467.233
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod04g2729 04 51231468 51235128 Dod04g2729 04 51231468 51235128 ECH
Dod02g1090 02 13579240 13583185 Dod04g2729 04 51231468 51235128 PCT